Literature DB >> 36178629

Databases and Tools to Investigate Protein-Metabolite Interactions.

Leonardo Perez de Souza1, Alisdair R Fernie2.   

Abstract

Protein-metabolite interactions (PMIs) are directly responsible for the regulation of numerous processes. From the direct regulation of enzymes to complex developmental processes intermediated by hormones, PMIs are central to understanding the molecular mechanisms of important physiological phenomena. Still, proving such interactions experimentally has proven an arduous task. We discuss here some of the current technologies contributing to expand our knowledge on PMIs, with particular emphasis on platforms and databases to explore the highly heterogenous nature of characterized PMIs, which is likely to be an essential resource on the development of new computational approaches to predict and validate interactions based on large-scale PMI screenings.
© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Metabolomics; Metabolomics web resources; Protein-metabolite databases; Protein-metabolite interactions; Proteomics

Mesh:

Substances:

Year:  2023        PMID: 36178629     DOI: 10.1007/978-1-0716-2624-5_14

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  67 in total

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Journal:  Nature       Date:  2000-06-15       Impact factor: 49.962

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Review 3.  Engineering of Metabolic Pathways Using Synthetic Enzyme Complexes.

Authors:  Nicholas Smirnoff
Journal:  Plant Physiol       Date:  2018-11-19       Impact factor: 8.340

4.  A Map of Protein-Metabolite Interactions Reveals Principles of Chemical Communication.

Authors:  Ilaria Piazza; Karl Kochanowski; Valentina Cappelletti; Tobias Fuhrer; Elad Noor; Uwe Sauer; Paola Picotti
Journal:  Cell       Date:  2018-01-04       Impact factor: 41.582

Review 5.  Metabolomics 20 years on: what have we learned and what hurdles remain?

Authors:  Saleh Alseekh; Alisdair R Fernie
Journal:  Plant J       Date:  2018-06       Impact factor: 6.417

Review 6.  Systematic mapping of protein-metabolite interactions with mass spectrometry-based techniques.

Authors:  Shanshan Li; Wenqing Shui
Journal:  Curr Opin Biotechnol       Date:  2019-10-10       Impact factor: 9.740

7.  Mass-spectrometry-based draft of the Arabidopsis proteome.

Authors:  Julia Mergner; Martin Frejno; Markus List; Michael Papacek; Xia Chen; Ajeet Chaudhary; Patroklos Samaras; Sandra Richter; Hiromasa Shikata; Maxim Messerer; Daniel Lang; Stefan Altmann; Philipp Cyprys; Daniel P Zolg; Toby Mathieson; Marcus Bantscheff; Rashmi R Hazarika; Tobias Schmidt; Corinna Dawid; Andreas Dunkel; Thomas Hofmann; Stefanie Sprunck; Pascal Falter-Braun; Frank Johannes; Klaus F X Mayer; Gerd Jürgens; Mathias Wilhelm; Jan Baumbach; Erwin Grill; Kay Schneitz; Claus Schwechheimer; Bernhard Kuster
Journal:  Nature       Date:  2020-03-11       Impact factor: 49.962

Review 8.  Metabolite sensing and signaling in cell metabolism.

Authors:  Yi-Ping Wang; Qun-Ying Lei
Journal:  Signal Transduct Target Ther       Date:  2018-11-09

Review 9.  Metabolons, enzyme-enzyme assemblies that mediate substrate channeling, and their roles in plant metabolism.

Authors:  Youjun Zhang; Alisdair R Fernie
Journal:  Plant Commun       Date:  2020-06-05

10.  Association of the malate dehydrogenase-citrate synthase metabolon is modulated by intermediates of the Krebs tricarboxylic acid cycle.

Authors:  Joy Omini; Izabela Wojciechowska; Aleksandra Skirycz; Hideaki Moriyama; Toshihiro Obata
Journal:  Sci Rep       Date:  2021-09-21       Impact factor: 4.379

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