Literature DB >> 36178163

An alternative and effective method for extracting skeletal organic matrix adapted to the red coral Corallium rubrum.

Philippe Ganot1,2, Guillaume Loentgen1,2, Frédéric Marin3, Laurent Plasseraud4, Denis Allemand1,5, Sylvie Tambutté1,2.   

Abstract

Skeleton formation in corals is a biologically controlled process in which an extracellular organic matrix (OM) is entrapped inside the calcified structure. The analysis of OM requires a time-consuming and tedious extraction that includes grinding, demineralization, multiple rinsing and concentration steps. Here we present an alternative and straightforward method for the red coral Corallium rubrum that requires little equipment and saves steps. The entire skeleton is directly demineralized to produce a tractable material called ghost, which is further rinsed and melted at 80°C in water. The comparative analysis of the standard and alternative methods by electrophoresis, western blot, and FTIR of C. rubrum OM, shows that the 'alternative OM' is of higher quality. Advantages and limitations of both methods are discussed.
© 2022. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  Biomineralization; Calcification; Octocorals

Mesh:

Substances:

Year:  2022        PMID: 36178163      PMCID: PMC9581515          DOI: 10.1242/bio.059536

Source DB:  PubMed          Journal:  Biol Open        ISSN: 2046-6390            Impact factor:   2.643


  19 in total

1.  Comparative analysis of the soluble organic matrix of axial skeleton and sclerites of Corallium rubrum: insights for biomineralization.

Authors:  J Debreuil; S Tambutté; D Zoccola; N Segonds; N Techer; D Allemand; E Tambutté
Journal:  Comp Biochem Physiol B Biochem Mol Biol       Date:  2011-01-28       Impact factor: 2.231

2.  Kinetic properties and affinities for sulfonamide inhibitors of an α-carbonic anhydrase (CruCA4) involved in coral biomineralization in the Mediterranean red coral Corallium rubrum.

Authors:  Sonia Del Prete; Daniela Vullo; Didier Zoccola; Sylvie Tambutté; Clemente Capasso; Claudiu T Supuran
Journal:  Bioorg Med Chem       Date:  2017-05-03       Impact factor: 3.641

3.  Caspartin and calprismin, two proteins of the shell calcitic prisms of the Mediterranean fan mussel Pinna nobilis.

Authors:  Frédéric Marin; Reinout Amons; Nathalie Guichard; Martin Stigter; Arnaud Hecker; Gilles Luquet; Pierre Layrolle; Gérard Alcaraz; Christophe Riondet; Peter Westbroek
Journal:  J Biol Chem       Date:  2005-07-01       Impact factor: 5.157

4.  Staining of the Ca2+-binding proteins, calsequestrin, calmodulin, troponin C, and S-100, with the cationic carbocyanine dye "Stains-all".

Authors:  K P Campbell; D H MacLennan; A O Jorgensen
Journal:  J Biol Chem       Date:  1983-09-25       Impact factor: 5.157

5.  Protonography and anion inhibition profile of the α-carbonic anhydrase (CruCA4) identified in the Mediterranean red coral Corallium rubrum.

Authors:  Sonia Del Prete; Daniela Vullo; Natacha Caminiti-Segonds; Didier Zoccola; Sylvie Tambutté; Claudiu T Supuran; Clemente Capasso
Journal:  Bioorg Chem       Date:  2017-12-05       Impact factor: 5.275

6.  Mineralizing matrices in the skeletal axes of two Corallium species (Alcyonacea).

Authors:  Yannicke Dauphin
Journal:  Comp Biochem Physiol A Mol Integr Physiol       Date:  2006-05-05       Impact factor: 2.320

7.  Analytical pyrolysis-based study on intra-skeletal organic matrices from Mediterranean corals.

Authors:  Alessio Adamiano; Stefano Goffredo; Zvy Dubinsky; Oren Levy; Simona Fermani; Daniele Fabbri; Giuseppe Falini
Journal:  Anal Bioanal Chem       Date:  2014-09       Impact factor: 4.142

8.  Characterization of irradiated starches by using FT-Raman and FTIR spectroscopy.

Authors:  Ramazan Kizil; Joseph Irudayaraj; Koushik Seetharaman
Journal:  J Agric Food Chem       Date:  2002-07-03       Impact factor: 5.279

9.  The skeletal organic matrix from Mediterranean coral Balanophyllia europaea influences calcium carbonate precipitation.

Authors:  Stefano Goffredo; Patrizia Vergni; Michela Reggi; Erik Caroselli; Francesca Sparla; Oren Levy; Zvy Dubinsky; Giuseppe Falini
Journal:  PLoS One       Date:  2011-07-22       Impact factor: 3.240

10.  Transcriptome analysis of the reef-building octocoral, Heliopora coerulea.

Authors:  Christine Guzman; Chuya Shinzato; Tsai-Ming Lu; Cecilia Conaco
Journal:  Sci Rep       Date:  2018-05-30       Impact factor: 4.379

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