Literature DB >> 36175501

Genomic basis of insularity and ecological divergence in barn owls (Tyto alba) of the Canary Islands.

Tristan Cumer1, Ana Paula Machado2, Felipe Siverio3, Sidi Imad Cherkaoui4, Inês Roque5, Rui Lourenço5, Motti Charter6,7, Alexandre Roulin2, Jérôme Goudet8,9.   

Abstract

Islands, and the particular organisms that populate them, have long fascinated biologists. Due to their isolation, islands offer unique opportunities to study the effect of neutral and adaptive mechanisms in determining genomic and phenotypical divergence. In the Canary Islands, an archipelago rich in endemics, the barn owl (Tyto alba), present in all the islands, is thought to have diverged into a subspecies (T. a. gracilirostris) on the eastern ones, Fuerteventura and Lanzarote. Taking advantage of 40 whole-genomes and modern population genomics tools, we provide the first look at the origin and genetic makeup of barn owls of this archipelago. We show that the Canaries hold diverse, long-standing and monophyletic populations with a neat distinction of gene pools from the different islands. Using a new method, less sensitive to structure than classical FST, to detect regions involved in local adaptation to insular environments, we identified a haplotype-like region likely under selection in all Canaries individuals and genes in this region suggest morphological adaptations to insularity. In the eastern islands, where the subspecies is present, genomic traces of selection pinpoint signs of adapted body proportions and blood pressure, consistent with the smaller size of this population living in a hot arid climate. In turn, genomic regions under selection in the western barn owls from Tenerife showed an enrichment in genes linked to hypoxia, a potential response to inhabiting a small island with a marked altitudinal gradient. Our results illustrate the interplay of neutral and adaptive forces in shaping divergence and early onset speciation.
© 2022. The Author(s).

Entities:  

Year:  2022        PMID: 36175501     DOI: 10.1038/s41437-022-00562-w

Source DB:  PubMed          Journal:  Heredity (Edinb)        ISSN: 0018-067X            Impact factor:   3.832


  47 in total

1.  The genetic basis of color-related local adaptation in a ring-like colonization around the Mediterranean.

Authors:  Reto Burri; Sylvain Antoniazza; Arnaud Gaigher; Anne-Lyse Ducrest; Céline Simon; Luca Fumagalli; Jérôme Goudet; Alexandre Roulin
Journal:  Evolution       Date:  2015-12-15       Impact factor: 3.694

2.  Heterozygote excess in small populations and the heterozygote-excess effective population size.

Authors:  François Balloux
Journal:  Evolution       Date:  2004-09       Impact factor: 3.694

3.  A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective.

Authors:  Matthieu Foll; Oscar Gaggiotti
Journal:  Genetics       Date:  2008-09-09       Impact factor: 4.562

Review 4.  Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow.

Authors:  Tami E Cruickshank; Matthew W Hahn
Journal:  Mol Ecol       Date:  2014-06-17       Impact factor: 6.185

5.  Heart rate, blood pressure, cardiac output, and total peripheral resistance of single comb White Leghorn hens during an acute exposure to 35 C ambient temperature.

Authors:  M J Darre; P C Harrison
Journal:  Poult Sci       Date:  1987-03       Impact factor: 3.352

6.  The variant call format and VCFtools.

Authors:  Petr Danecek; Adam Auton; Goncalo Abecasis; Cornelis A Albers; Eric Banks; Mark A DePristo; Robert E Handsaker; Gerton Lunter; Gabor T Marth; Stephen T Sherry; Gilean McVean; Richard Durbin
Journal:  Bioinformatics       Date:  2011-06-07       Impact factor: 6.937

7.  The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.

Authors:  William J Astle; Heather Elding; Tao Jiang; Dave Allen; Dace Ruklisa; Alice L Mann; Daniel Mead; Heleen Bouman; Fernando Riveros-Mckay; Myrto A Kostadima; John J Lambourne; Suthesh Sivapalaratnam; Kate Downes; Kousik Kundu; Lorenzo Bomba; Kim Berentsen; John R Bradley; Louise C Daugherty; Olivier Delaneau; Kathleen Freson; Stephen F Garner; Luigi Grassi; Jose Guerrero; Matthias Haimel; Eva M Janssen-Megens; Anita Kaan; Mihir Kamat; Bowon Kim; Amit Mandoli; Jonathan Marchini; Joost H A Martens; Stuart Meacham; Karyn Megy; Jared O'Connell; Romina Petersen; Nilofar Sharifi; Simon M Sheard; James R Staley; Salih Tuna; Martijn van der Ent; Klaudia Walter; Shuang-Yin Wang; Eleanor Wheeler; Steven P Wilder; Valentina Iotchkova; Carmel Moore; Jennifer Sambrook; Hendrik G Stunnenberg; Emanuele Di Angelantonio; Stephen Kaptoge; Taco W Kuijpers; Enrique Carrillo-de-Santa-Pau; David Juan; Daniel Rico; Alfonso Valencia; Lu Chen; Bing Ge; Louella Vasquez; Tony Kwan; Diego Garrido-Martín; Stephen Watt; Ying Yang; Roderic Guigo; Stephan Beck; Dirk S Paul; Tomi Pastinen; David Bujold; Guillaume Bourque; Mattia Frontini; John Danesh; David J Roberts; Willem H Ouwehand; Adam S Butterworth; Nicole Soranzo
Journal:  Cell       Date:  2016-11-17       Impact factor: 41.582

8.  Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.

Authors:  Ming-Huei Chen; Laura M Raffield; Abdou Mousas; Saori Sakaue; Jennifer E Huffman; Arden Moscati; Bhavi Trivedi; Tao Jiang; Parsa Akbari; Dragana Vuckovic; Erik L Bao; Xue Zhong; Regina Manansala; Véronique Laplante; Minhui Chen; Ken Sin Lo; Huijun Qian; Caleb A Lareau; Mélissa Beaudoin; Karen A Hunt; Masato Akiyama; Traci M Bartz; Yoav Ben-Shlomo; Andrew Beswick; Jette Bork-Jensen; Erwin P Bottinger; Jennifer A Brody; Frank J A van Rooij; Kumaraswamynaidu Chitrala; Kelly Cho; Hélène Choquet; Adolfo Correa; John Danesh; Emanuele Di Angelantonio; Niki Dimou; Jingzhong Ding; Paul Elliott; Tõnu Esko; Michele K Evans; James S Floyd; Linda Broer; Niels Grarup; Michael H Guo; Andreas Greinacher; Jeff Haessler; Torben Hansen; Joanna M M Howson; Qin Qin Huang; Wei Huang; Eric Jorgenson; Tim Kacprowski; Mika Kähönen; Yoichiro Kamatani; Masahiro Kanai; Savita Karthikeyan; Fotis Koskeridis; Leslie A Lange; Terho Lehtimäki; Markus M Lerch; Allan Linneberg; Yongmei Liu; Leo-Pekka Lyytikäinen; Ani Manichaikul; Hilary C Martin; Koichi Matsuda; Karen L Mohlke; Nina Mononen; Yoshinori Murakami; Girish N Nadkarni; Matthias Nauck; Kjell Nikus; Willem H Ouwehand; Nathan Pankratz; Oluf Pedersen; Michael Preuss; Bruce M Psaty; Olli T Raitakari; David J Roberts; Stephen S Rich; Benjamin A T Rodriguez; Jonathan D Rosen; Jerome I Rotter; Petra Schubert; Cassandra N Spracklen; Praveen Surendran; Hua Tang; Jean-Claude Tardif; Richard C Trembath; Mohsen Ghanbari; Uwe Völker; Henry Völzke; Nicholas A Watkins; Alan B Zonderman; Peter W F Wilson; Yun Li; Adam S Butterworth; Jean-François Gauchat; Charleston W K Chiang; Bingshan Li; Ruth J F Loos; William J Astle; Evangelos Evangelou; David A van Heel; Vijay G Sankaran; Yukinori Okada; Nicole Soranzo; Andrew D Johnson; Alexander P Reiner; Paul L Auer; Guillaume Lettre
Journal:  Cell       Date:  2020-09-03       Impact factor: 66.850

9.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

10.  The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals.

Authors:  Georg B Ehret; Teresa Ferreira; Daniel I Chasman; Anne U Jackson; Ellen M Schmidt; Toby Johnson; Gudmar Thorleifsson; Jian'an Luan; Lousie A Donnelly; Stavroula Kanoni; Ann-Kristin Petersen; Vasyl Pihur; Rona J Strawbridge; Dmitry Shungin; Maria F Hughes; Osorio Meirelles; Marika Kaakinen; Nabila Bouatia-Naji; Kati Kristiansson; Sonia Shah; Marcus E Kleber; Xiuqing Guo; Leo-Pekka Lyytikäinen; Cristiano Fava; Niclas Eriksson; Ilja M Nolte; Patrik K Magnusson; Elias L Salfati; Loukianos S Rallidis; Elizabeth Theusch; Andrew J P Smith; Lasse Folkersen; Kate Witkowska; Tune H Pers; Roby Joehanes; Stuart K Kim; Lazaros Lataniotis; Rick Jansen; Andrew D Johnson; Helen Warren; Young Jin Kim; Wei Zhao; Ying Wu; Bamidele O Tayo; Murielle Bochud; Devin Absher; Linda S Adair; Najaf Amin; Dan E Arking; Tomas Axelsson; Damiano Baldassarre; Beverley Balkau; Stefania Bandinelli; Michael R Barnes; Inês Barroso; Stephen Bevan; Joshua C Bis; Gyda Bjornsdottir; Michael Boehnke; Eric Boerwinkle; Lori L Bonnycastle; Dorret I Boomsma; Stefan R Bornstein; Morris J Brown; Michel Burnier; Claudia P Cabrera; John C Chambers; I-Shou Chang; Ching-Yu Cheng; Peter S Chines; Ren-Hua Chung; Francis S Collins; John M Connell; Angela Döring; Jean Dallongeville; John Danesh; Ulf de Faire; Graciela Delgado; Anna F Dominiczak; Alex S F Doney; Fotios Drenos; Sarah Edkins; John D Eicher; Roberto Elosua; Stefan Enroth; Jeanette Erdmann; Per Eriksson; Tonu Esko; Evangelos Evangelou; Alun Evans; Tove Fall; Martin Farrall; Janine F Felix; Jean Ferrières; Luigi Ferrucci; Myriam Fornage; Terrence Forrester; Nora Franceschini; Oscar H Franco Duran; Anders Franco-Cereceda; Ross M Fraser; Santhi K Ganesh; He Gao; Karl Gertow; Francesco Gianfagna; Bruna Gigante; Franco Giulianini; Anuj Goel; Alison H Goodall; Mark O Goodarzi; Mathias Gorski; Jürgen Gräßler; Christopher Groves; Vilmundur Gudnason; Ulf Gyllensten; Göran Hallmans; Anna-Liisa Hartikainen; Maija Hassinen; Aki S Havulinna; Caroline Hayward; Serge Hercberg; Karl-Heinz Herzig; Andrew A Hicks; Aroon D Hingorani; Joel N Hirschhorn; Albert Hofman; Jostein Holmen; Oddgeir Lingaas Holmen; Jouke-Jan Hottenga; Phil Howard; Chao A Hsiung; Steven C Hunt; M Arfan Ikram; Thomas Illig; Carlos Iribarren; Richard A Jensen; Mika Kähönen; Hyun Kang; Sekar Kathiresan; Brendan J Keating; Kay-Tee Khaw; Yun Kyoung Kim; Eric Kim; Mika Kivimaki; Norman Klopp; Genovefa Kolovou; Pirjo Komulainen; Jaspal S Kooner; Gulum Kosova; Ronald M Krauss; Diana Kuh; Zoltan Kutalik; Johanna Kuusisto; Kirsti Kvaløy; Timo A Lakka; Nanette R Lee; I-Te Lee; Wen-Jane Lee; Daniel Levy; Xiaohui Li; Kae-Woei Liang; Honghuang Lin; Li Lin; Jaana Lindström; Stéphane Lobbens; Satu Männistö; Gabriele Müller; Martina Müller-Nurasyid; François Mach; Hugh S Markus; Eirini Marouli; Mark I McCarthy; Colin A McKenzie; Pierre Meneton; Cristina Menni; Andres Metspalu; Vladan Mijatovic; Leena Moilanen; May E Montasser; Andrew D Morris; Alanna C Morrison; Antonella Mulas; Ramaiah Nagaraja; Narisu Narisu; Kjell Nikus; Christopher J O'Donnell; Paul F O'Reilly; Ken K Ong; Fred Paccaud; Cameron D Palmer; Afshin Parsa; Nancy L Pedersen; Brenda W Penninx; Markus Perola; Annette Peters; Neil Poulter; Peter P Pramstaller; Bruce M Psaty; Thomas Quertermous; Dabeeru C Rao; Asif Rasheed; N William N W R Rayner; Frida Renström; Rainer Rettig; Kenneth M Rice; Robert Roberts; Lynda M Rose; Jacques Rossouw; Nilesh J Samani; Serena Sanna; Jouko Saramies; Heribert Schunkert; Sylvain Sebert; Wayne H-H Sheu; Young-Ah Shin; Xueling Sim; Johannes H Smit; Albert V Smith; Maria X Sosa; Tim D Spector; Alena Stančáková; Alice Stanton; Kathleen E Stirrups; Heather M Stringham; Johan Sundstrom; Amy J Swift; Ann-Christine Syvänen; E-Shyong Tai; Toshiko Tanaka; Kirill V Tarasov; Alexander Teumer; Unnur Thorsteinsdottir; Martin D Tobin; Elena Tremoli; Andre G Uitterlinden; Matti Uusitupa; Ahmad Vaez; Dhananjay Vaidya; Cornelia M van Duijn; Erik P A van Iperen; Ramachandran S Vasan; Germaine C Verwoert; Jarmo Virtamo; Veronique Vitart; Benjamin F Voight; Peter Vollenweider; Aline Wagner; Louise V Wain; Nicholas J Wareham; Hugh Watkins; Alan B Weder; Harm-Jan Westra; Rainford Wilks; Tom Wilsgaard; James F Wilson; Tien Y Wong; Tsun-Po Yang; Jie Yao; Loic Yengo; Weihua Zhang; Jing Hua Zhao; Xiaofeng Zhu; Pascal Bovet; Richard S Cooper; Karen L Mohlke; Danish Saleheen; Jong-Young Lee; Paul Elliott; Hinco J Gierman; Cristen J Willer; Lude Franke; G Kees Hovingh; Kent D Taylor; George Dedoussis; Peter Sever; Andrew Wong; Lars Lind; Themistocles L Assimes; Inger Njølstad; Peter Eh Schwarz; Claudia Langenberg; Harold Snieder; Mark J Caulfield; Olle Melander; Markku Laakso; Juha Saltevo; Rainer Rauramaa; Jaakko Tuomilehto; Erik Ingelsson; Terho Lehtimäki; Kristian Hveem; Walter Palmas; Winfried März; Meena Kumari; Veikko Salomaa; Yii-Der I Chen; Jerome I Rotter; Philippe Froguel; Marjo-Riitta Jarvelin; Edward G Lakatta; Kari Kuulasmaa; Paul W Franks; Anders Hamsten; H-Erich Wichmann; Colin N A Palmer; Kari Stefansson; Paul M Ridker; Ruth J F Loos; Aravinda Chakravarti; Panos Deloukas; Andrew P Morris; Christopher Newton-Cheh; Patricia B Munroe
Journal:  Nat Genet       Date:  2016-09-12       Impact factor: 38.330

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