| Literature DB >> 36173958 |
Supriya Kumar1, Matthew Arnold2, Glen James3, Rema Padman4.
Abstract
OBJECTIVES: To describe a flexible common data model (CDM) approach that can be efficiently tailored to study-specific needs to facilitate pooled patient-level analysis and aggregated/meta-analysis of routinely collected retrospective patient data from disparate data sources; and to detail the application of this CDM approach to the DISCOVER CKD retrospective cohort, a longitudinal database of routinely collected (secondary) patient data of individuals with chronic kidney disease (CKD).Entities:
Mesh:
Year: 2022 PMID: 36173958 PMCID: PMC9521926 DOI: 10.1371/journal.pone.0274131
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.752
Established databases included in DISCOVER CKD.
| Status (CDM) | Database name | Country | Database type | Coverage | Reference |
|---|---|---|---|---|---|
| Included in CDM for 2020 analyses | TriNetX [ | USA | EHR | Inpatient and outpatient | Topaloglu U, et al. |
| Explorys (LCED) [ | USA | EHR and claims | Inpatient and outpatient |
| |
| DOPPS [ | USA | EHR | Hemodialysis | Pisoni RL, et al. | |
| CPRD [ | UK | EHR | Primary care, inpatient and outpatient, ER | Herrett E, et al. | |
| JMDV [ | Japan | EHR and claims | Inpatient and outpatient | Tanaka S, et al. | |
| Upcoming (2021) | J-CKD DB (Kawasaki Medical School) [ | Japan | EHR | Inpatient and outpatient | Nakagawa N, et al. |
CDM, common data model; CPRD, Clinical Practice Research Datalink; DOPPS, Dialysis Outcomes and Practice Patterns Study; EHR, electronic health record; ER, emergency room; J-CKD DB, Japan Chronic Kidney Disease Database; JMDV, Japan Medical Data Vision; LCED, Limited Claims and Electronic Health Record Database.
Secondary data and baseline covariates of patients included in DISCOVER CKD.
| Overall | TriNetX | Explorys (LCED) | DOPPS | CPRD | JMDV | |
|---|---|---|---|---|---|---|
|
| ||||||
|
| 76.8 | 53.1 | 16.9 | 7.1 | 15.4 | 8.1 |
|
| 1,042,035,868 | 417,339,825 | 181,577,200 | 3,852,045 | 250,747,268 | 46,344,726 |
|
| 22,756,095 | 10,962,854 | 5,129,753 | 16,626 | 3,512,078 | 4,143,808 |
|
| 21 | 20 | 19 | 1 | 18 | 14 |
|
| 168,815,184 | 84,116,926 | 73,572,637 | 108,890 | 7,865,001 | 3,151,730 |
|
| 63 | 57 | 57 | 18 | 60 | 56 |
|
| 364,318,203b | 46,335,922 | 25,870,962 | 452,163 | 124,011,918 | 23,449,842 |
|
| 57 | 42 | 46 | 20 | 46 | 38 |
|
| 458,706,628 | 271,238,863 | 68,540,692 | 3,209,992 | 102,051,746 | 15,104,149 |
|
| 44 | 31 | 33 | 21 | 35 | 19 |
|
| ||||||
|
| 68.5 (13.69) | 65.87 (13.41) | 69.93 (13.98) | - | 72.03 (12.76) | 75.99 (12.76) |
|
| 417,512 (55.7) | 264,633 (56.3) | 49,845 (54.7) | 8109 (42.7) | 104,650 (58.0) | 40,120 (50.0) |
|
| 28.89 (5.67) | 28.88 (5.37) | 30.19 (7.24) | - | 28.91 (6.26) | - |
|
| 49.45 (15.56) | 48.3 (16.48) | 52.07 (14.75) | - | 53.7 (11.08) | 49.16 (14.76) |
|
| 139,973 (18.7) | 99,497 (21.2) | 31,458 (34.6) | - | 4683 (2.6) | 35,793 (44.6) |
|
| 273,092 (36.4) | 13,4612 (28.6) | 49,579 (54.5) | 18,982 (100.0) | 80,650 (44.7) | 38,848 (48.4) |
|
| 224,656 (30.0) | 162,293 (34.5) | 36,232 (39.8) | 18 (0.1) | 33,771 (18.7) | 28,574 (35.6) |
|
| 483,061 (64.4) | 311,769 (66.3) | 76,185 (83.7) | 15,058 (79.3) | 98,554 (54.6) | 57,680 (71.9) |
|
| 138,400 (18.5) | 71,987 (15.3) | 18,287 (20.1) | 4588 (24.2) | 12,528 (6.9) | 49,297 (61.5) |
aOverall database size is smaller than the sum of contributing sources due to data compression inside the Amazon Redshift cloud data warehouse.
bOverall events contain additional composite events generated following harmonization of data sources into the DISCOVER CKD retrospective cohort.
cOverall baseline covariates exclude LCED, which could not be pooled due to data privacy restrictions.
BMI, body mass index; CKD, chronic kidney disease; CPRD, Clinical Practice Research Datalink; DOPPS, Dialysis Outcomes and Practice Patterns Study; eGFR, estimated glomerular filtration rate; JMDV, Japan Medical Data Vision; LCED, Limited Claims and Electronic Health Record Dataset; SD, standard deviation.