Literature DB >> 36173428

Draft Genome Sequence of Shewanella indica Isolated from a Marine Sponge (Callyspongia diffusa).

Devika Raj1, Abdulaziz Anas1, Jasmin Chekidhenkuzhiyil1.   

Abstract

The draft genome sequence of Shewanella indica strain MMRF542, which was isolated from a marine sponge (Callyspongia diffusa), is reported. The genome sequence provides insight into the ecological relevance and biotechnological potential of Shewanella species.

Entities:  

Year:  2022        PMID： 36173428      PMCID： PMC9584210          DOI： 10.1128/mra.00552-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  9 in total

Review 1.  Ecology and biotechnology of the genus Shewanella.

Authors:  Heidi H Hau; Jeffrey A Gralnick
Journal:  Annu Rev Microbiol       Date:  2007       Impact factor: 15.500

2.  MeDuSa: a multi-draft based scaffolder.

Authors:  Emanuele Bosi; Beatrice Donati; Marco Galardini; Sara Brunetti; Marie-France Sagot; Pietro Lió; Pierluigi Crescenzi; Renato Fani; Marco Fondi
Journal:  Bioinformatics       Date:  2015-03-25       Impact factor: 6.937

3.  Sponge-Associated Bacteria Produce Non-cytotoxic Melanin Which Protects Animal Cells from Photo-Toxicity.

Authors:  Vijitha Vijayan; Chekidhenkuzhiyil Jasmin; Abdulaziz Anas; Sreelakshmi Parakkaparambil Kuttan; Saradavey Vinothkumar; Parameswaran Perunninakulath Subrayan; Shanta Nair
Journal:  Appl Biochem Biotechnol       Date:  2017-03-17       Impact factor: 2.926

4.  Prokka: rapid prokaryotic genome annotation.

Authors:  Torsten Seemann
Journal:  Bioinformatics       Date:  2014-03-18       Impact factor: 6.937

5.  Characterization of pyomelanin secreted by Shewanella sp. and their application in metal recovery.

Authors:  Sreelakshmi Parakkaparambil Kuttan; Anas Abdulaziz; Jasmin Chekidhenkuzhiyil; Devika Raj; Mahesh Mohan; Sujith Athiyanathil
Journal:  Environ Sci Pollut Res Int       Date:  2022-08-25       Impact factor: 5.190

6.  The CGView Server: a comparative genomics tool for circular genomes.

Authors:  Jason R Grant; Paul Stothard
Journal:  Nucleic Acids Res       Date:  2008-04-14       Impact factor: 16.971

7.  Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Authors:  Ryan R Wick; Louise M Judd; Claire L Gorrie; Kathryn E Holt
Journal:  PLoS Comput Biol       Date:  2017-06-08       Impact factor: 4.475

8.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

9.  Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications.

Authors:  Keith A Jolley; James E Bray; Martin C J Maiden
Journal:  Wellcome Open Res       Date:  2018-09-24
  9 in total

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