Literature DB >> 36173192

Complete Genome Sequences of Five Phietaviruses Infecting Staphylococcus aureus.

Taylor P Andrews1, J Steen Hoyer2, Nicole L Fahrenfeld3, Jeffrey M Boyd4, Siobain Duffy2.   

Abstract

The annotated whole-genome sequences of five cultured phietaviruses infecting Staphylococcus aureus are presented. They are closely related to prophages that were previously sequenced as part of S. aureus genomes.

Entities:  

Year:  2022        PMID： 36173192      PMCID： PMC9583785          DOI： 10.1128/mra.00855-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  19 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

Review 2.  Staphylococcus aureus infections: epidemiology, pathophysiology, clinical manifestations, and management.

Authors:  Steven Y C Tong; Joshua S Davis; Emily Eichenberger; Thomas L Holland; Vance G Fowler
Journal:  Clin Microbiol Rev       Date:  2015-07       Impact factor: 26.132

3.  Tools, Strains, and Strategies To Effectively Conduct Anaerobic and Aerobic Transcriptional Reporter Screens and Assays in Staphylococcus aureus.

Authors:  Erin E Price; Paulami Rudra; Javiera Norambuena; Franklin Román-Rodríguez; Jeffrey M Boyd
Journal:  Appl Environ Microbiol       Date:  2021-08-18       Impact factor: 4.792

4.  Phage Genome Annotation: Where to Begin and End.

Authors:  Anastasiya Shen; Andrew Millard
Journal:  Phage (New Rochelle)       Date:  2021-12-16

5.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

Review 6.  Phages and their potential to modulate the microbiome and immunity.

Authors:  Sara Federici; Samuel P Nobs; Eran Elinav
Journal:  Cell Mol Immunol       Date:  2020-09-08       Impact factor: 11.530

7.  Phage Annotation Guide: Guidelines for Assembly and High-Quality Annotation.

Authors:  Dann Turner; Evelien M Adriaenssens; Igor Tolstoy; Andrew M Kropinski
Journal:  Phage (New Rochelle)       Date:  2021-12-16

8.  The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification.

Authors:  Pakorn Aiewsakun; Peter Simmonds
Journal:  Microbiome       Date:  2018-02-20       Impact factor: 14.650

9.  Rfam 14: expanded coverage of metagenomic, viral and microRNA families.

Authors:  Ioanna Kalvari; Eric P Nawrocki; Nancy Ontiveros-Palacios; Joanna Argasinska; Kevin Lamkiewicz; Manja Marz; Sam Griffiths-Jones; Claire Toffano-Nioche; Daniel Gautheret; Zasha Weinberg; Elena Rivas; Sean R Eddy; Robert D Finn; Alex Bateman; Anton I Petrov
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971
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