Literature DB >> 36172297

Covariate Information Number for Feature Screening in Ultrahigh-Dimensional Supervised Problems.

Debmalya Nandy1, Francesca Chiaromonte2,3, Runze Li2.   

Abstract

Contemporary high-throughput experimental and surveying techniques give rise to ultrahigh-dimensional supervised problems with sparse signals; that is, a limited number of observations (n), each with a very large number of covariates (p >> n), only a small share of which is truly associated with the response. In these settings, major concerns on computational burden, algorithmic stability, and statistical accuracy call for substantially reducing the feature space by eliminating redundant covariates before the use of any sophisticated statistical analysis. Along the lines of Sure Independence Screening (Fan and Lv, 2008) and other model- and correlation-based feature screening methods, we propose a model-free procedure called Covariate Information Number - Sure Independence Screening (CIS). CIS uses a marginal utility connected to the notion of the traditional Fisher Information, possesses the sure screening property, and is applicable to any type of response (features) with continuous features (response). Simulations and an application to transcriptomic data on rats reveal the comparative strengths of CIS over some popular feature screening methods.

Entities:  

Keywords:  Affymetrix GeneChip Rat Genome 230 2.0 Array; Fisher information; Model-free; Supervised problems; Sure independence screening; Ultrahigh dimension

Year:  2021        PMID: 36172297      PMCID: PMC9512254          DOI: 10.1080/01621459.2020.1864380

Source DB:  PubMed          Journal:  J Am Stat Assoc        ISSN: 0162-1459            Impact factor:   4.369


  21 in total

1.  Nonparametric Independence Screening in Sparse Ultra-High Dimensional Additive Models.

Authors:  Jianqing Fan; Yang Feng; Rui Song
Journal:  J Am Stat Assoc       Date:  2011-06       Impact factor: 5.033

2.  A Selective Overview of Variable Selection in High Dimensional Feature Space.

Authors:  Jianqing Fan; Jinchi Lv
Journal:  Stat Sin       Date:  2010-01       Impact factor: 1.261

3.  Model-Free Feature Screening for Ultrahigh Dimensional Discriminant Analysis.

Authors:  Hengjian Cui; Runze Li; Wei Zhong
Journal:  J Am Stat Assoc       Date:  2015-06-01       Impact factor: 5.033

4.  Regulation of gene expression in the mammalian eye and its relevance to eye disease.

Authors:  Todd E Scheetz; Kwang-Youn A Kim; Ruth E Swiderski; Alisdair R Philp; Terry A Braun; Kevin L Knudtson; Anne M Dorrance; Gerald F DiBona; Jian Huang; Thomas L Casavant; Val C Sheffield; Edwin M Stone
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-18       Impact factor: 11.205

5.  Phenotypic characterization of 3 families with autosomal dominant retinitis pigmentosa due to mutations in KLHL7.

Authors:  Yuquan Wen; Kirsten G Locke; Martin Klein; Sara J Bowne; Lori S Sullivan; Joseph W Ray; Stephen P Daiger; David G Birch; Dianna K Hughbanks-Wheaton
Journal:  Arch Ophthalmol       Date:  2011-11

6.  Homozygosity mapping with SNP arrays identifies TRIM32, an E3 ubiquitin ligase, as a Bardet-Biedl syndrome gene (BBS11).

Authors:  Annie P Chiang; John S Beck; Hsan-Jan Yen; Marwan K Tayeh; Todd E Scheetz; Ruth E Swiderski; Darryl Y Nishimura; Terry A Braun; Kwang-Youn A Kim; Jian Huang; Khalil Elbedour; Rivka Carmi; Diane C Slusarski; Thomas L Casavant; Edwin M Stone; Val C Sheffield
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

7.  Error Variance Estimation in Ultrahigh-Dimensional Additive Models.

Authors:  Zhao Chen; Jianqing Fan; Runze Li
Journal:  J Am Stat Assoc       Date:  2017-09-26       Impact factor: 5.033

8.  HIGH DIMENSIONAL VARIABLE SELECTION.

Authors:  Larry Wasserman; Kathryn Roeder
Journal:  Ann Stat       Date:  2009-01-01       Impact factor: 4.028

9.  A selective overview of feature screening for ultrahigh-dimensional data.

Authors:  Liu JingYuan; Zhong Wei; L I RunZe
Journal:  Sci China Math       Date:  2015-08-22       Impact factor: 1.331

10.  Feature Screening via Distance Correlation Learning.

Authors:  Runze Li; Wei Zhong; Liping Zhu
Journal:  J Am Stat Assoc       Date:  2012-07-01       Impact factor: 5.033

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