Literature DB >> 36171426

Developmental dynamics of RNA translation in the human brain.

Erin E Duffy1, Benjamin Finander2, GiHun Choi2, Ava C Carter2, Iva Pritisanac3,4,5,6, Aqsa Alam3, Victor Luria7,8,9, Amir Karger10, William Phu9,11,12, Maxwell A Sherman13, Elena G Assad2, Naomi Pajarillo2, Alexandra Khitun14, Elizabeth E Crouch15,16, Sanika Ganesh2, Jin Chen17, Bonnie Berger13, Nenad Sestan7, Anne O'Donnell-Luria9,11,12, Eric J Huang18,19,20, Eric C Griffith2, Julie D Forman-Kay4,5, Alan M Moses3, Brian T Kalish21,22,23, Michael E Greenberg24.   

Abstract

The precise regulation of gene expression is fundamental to neurodevelopment, plasticity and cognitive function. Although several studies have profiled transcription in the developing human brain, there is a gap in understanding of accompanying translational regulation. In this study, we performed ribosome profiling on 73 human prenatal and adult cortex samples. We characterized the translational regulation of annotated open reading frames (ORFs) and identified thousands of previously unknown translation events, including small ORFs that give rise to human-specific and/or brain-specific microproteins, many of which we independently verified using proteomics. Ribosome profiling in stem-cell-derived human neuronal cultures corroborated these findings and revealed that several neuronal activity-induced non-coding RNAs encode previously undescribed microproteins. Physicochemical analysis of brain microproteins identified a class of proteins that contain arginine-glycine-glycine (RGG) repeats and, thus, may be regulators of RNA metabolism. This resource expands the known translational landscape of the human brain and illuminates previously unknown brain-specific protein products.
© 2022. The Author(s), under exclusive licence to Springer Nature America, Inc.

Entities:  

Mesh:

Substances:

Year:  2022        PMID: 36171426     DOI: 10.1038/s41593-022-01164-9

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   28.771


  70 in total

1.  Pervasive functional translation of noncanonical human open reading frames.

Authors:  Jin Chen; Andreas-David Brunner; J Zachery Cogan; James K Nuñez; Alexander P Fields; Britt Adamson; Daniel N Itzhak; Jason Y Li; Matthias Mann; Manuel D Leonetti; Jonathan S Weissman
Journal:  Science       Date:  2020-03-06       Impact factor: 47.728

2.  The Translational Landscape of the Human Heart.

Authors:  Sebastiaan van Heesch; Franziska Witte; Valentin Schneider-Lunitz; Jana F Schulz; Eleonora Adami; Allison B Faber; Marieluise Kirchner; Henrike Maatz; Susanne Blachut; Clara-Louisa Sandmann; Masatoshi Kanda; Catherine L Worth; Sebastian Schafer; Lorenzo Calviello; Rhys Merriott; Giannino Patone; Oliver Hummel; Emanuel Wyler; Benedikt Obermayer; Michael B Mücke; Eric L Lindberg; Franziska Trnka; Sebastian Memczak; Marcel Schilling; Leanne E Felkin; Paul J R Barton; Nicholas M Quaife; Konstantinos Vanezis; Sebastian Diecke; Masaya Mukai; Nancy Mah; Su-Jun Oh; Andreas Kurtz; Christoph Schramm; Dorothee Schwinge; Marcial Sebode; Magdalena Harakalova; Folkert W Asselbergs; Aryan Vink; Roel A de Weger; Sivakumar Viswanathan; Anissa A Widjaja; Anna Gärtner-Rommel; Hendrik Milting; Cris Dos Remedios; Christoph Knosalla; Philipp Mertins; Markus Landthaler; Martin Vingron; Wolfgang A Linke; Jonathan G Seidman; Christine E Seidman; Nikolaus Rajewsky; Uwe Ohler; Stuart A Cook; Norbert Hubner
Journal:  Cell       Date:  2019-05-30       Impact factor: 41.582

3.  RibORF: Identifying Genome-Wide Translated Open Reading Frames Using Ribosome Profiling.

Authors:  Zhe Ji
Journal:  Curr Protoc Mol Biol       Date:  2018-09-04

4.  Dom34 rescues ribosomes in 3' untranslated regions.

Authors:  Nicholas R Guydosh; Rachel Green
Journal:  Cell       Date:  2014-02-27       Impact factor: 41.582

5.  Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes.

Authors:  Nicholas T Ingolia; Liana F Lareau; Jonathan S Weissman
Journal:  Cell       Date:  2011-11-03       Impact factor: 41.582

6.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

7.  A human microprotein that interacts with the mRNA decapping complex.

Authors:  Nadia G D'Lima; Jiao Ma; Lauren Winkler; Qian Chu; Ken H Loh; Elizabeth O Corpuz; Bogdan A Budnik; Jens Lykke-Andersen; Alan Saghatelian; Sarah A Slavoff
Journal:  Nat Chem Biol       Date:  2016-12-05       Impact factor: 15.040

8.  MOXI Is a Mitochondrial Micropeptide That Enhances Fatty Acid β-Oxidation.

Authors:  Catherine A Makarewich; Kedryn K Baskin; Amir Z Munir; Svetlana Bezprozvannaya; Gaurav Sharma; Chalermchai Khemtong; Akansha M Shah; John R McAnally; Craig R Malloy; Luke I Szweda; Rhonda Bassel-Duby; Eric N Olson
Journal:  Cell Rep       Date:  2018-06-26       Impact factor: 9.423

9.  A draft map of the human proteome.

Authors:  Min-Sik Kim; Sneha M Pinto; Derese Getnet; Raja Sekhar Nirujogi; Srikanth S Manda; Raghothama Chaerkady; Anil K Madugundu; Dhanashree S Kelkar; Ruth Isserlin; Shobhit Jain; Joji K Thomas; Babylakshmi Muthusamy; Pamela Leal-Rojas; Praveen Kumar; Nandini A Sahasrabuddhe; Lavanya Balakrishnan; Jayshree Advani; Bijesh George; Santosh Renuse; Lakshmi Dhevi N Selvan; Arun H Patil; Vishalakshi Nanjappa; Aneesha Radhakrishnan; Samarjeet Prasad; Tejaswini Subbannayya; Rajesh Raju; Manish Kumar; Sreelakshmi K Sreenivasamurthy; Arivusudar Marimuthu; Gajanan J Sathe; Sandip Chavan; Keshava K Datta; Yashwanth Subbannayya; Apeksha Sahu; Soujanya D Yelamanchi; Savita Jayaram; Pavithra Rajagopalan; Jyoti Sharma; Krishna R Murthy; Nazia Syed; Renu Goel; Aafaque A Khan; Sartaj Ahmad; Gourav Dey; Keshav Mudgal; Aditi Chatterjee; Tai-Chung Huang; Jun Zhong; Xinyan Wu; Patrick G Shaw; Donald Freed; Muhammad S Zahari; Kanchan K Mukherjee; Subramanian Shankar; Anita Mahadevan; Henry Lam; Christopher J Mitchell; Susarla Krishna Shankar; Parthasarathy Satishchandra; John T Schroeder; Ravi Sirdeshmukh; Anirban Maitra; Steven D Leach; Charles G Drake; Marc K Halushka; T S Keshava Prasad; Ralph H Hruban; Candace L Kerr; Gary D Bader; Christine A Iacobuzio-Donahue; Harsha Gowda; Akhilesh Pandey
Journal:  Nature       Date:  2014-05-29       Impact factor: 49.962

10.  The DWORF micropeptide enhances contractility and prevents heart failure in a mouse model of dilated cardiomyopathy.

Authors:  Catherine A Makarewich; Amir Z Munir; Gabriele G Schiattarella; Svetlana Bezprozvannaya; Olga N Raguimova; Ellen E Cho; Alexander H Vidal; Seth L Robia; Rhonda Bassel-Duby; Eric N Olson
Journal:  Elife       Date:  2018-10-09       Impact factor: 8.140

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.