Literature DB >> 36171295

Comprehensive targeted next-generation sequencing in patients with slow-flow vascular malformations.

Akifumi Nozawa1,2, Akihiro Fujino3, Shunsuke Yuzuriha4, Souichi Suenobu5,6, Aiko Kato7, Fumiaki Shimizu7, Noriko Aramaki-Hattori8, Kanako Kuniyeda9, Kazuya Sakaguchi10, Hidenori Ohnishi1,11, Yoko Aoki2, Michio Ozeki12.   

Abstract

Recent studies have shown that the PI3K signaling pathway plays an important role in the pathogenesis of slow-flow vascular malformations (SFVMs). Analysis of genetic mutations has advanced our understanding of the mechanisms involved in SFVM pathogenesis and may identify new therapeutic targets. We screened for somatic variants in a cohort of patients with SFVMs using targeted next-generation sequencing. Targeted next-generation sequencing of 29 candidate genes associated with vascular anomalies or with the PI3K signaling pathway was performed on affected tissues from patients with SFVMs. Fifty-nine patients with SFVMs (venous malformations n  =  21, lymphatic malformations n  =  27, lymphatic venous malformations n  =  1, and Klippel-Trenaunay syndrome n  =  10) were included in the study. TEK and PIK3CA were the most commonly mutated genes in the study. We detected eight TEK pathogenic variants in 10 samples (16.9%) and three PIK3CA pathogenic variants in 28 samples (47.5%). In total, 37 of 59 patients (62.7%) with SFVMs harbored pathogenic variants in these three genes involved in the PI3K signaling pathway. Inhibitors of this pathway may prove useful as molecular targeted therapies for SFVMs.
© 2022. The Author(s), under exclusive licence to The Japan Society of Human Genetics.

Entities:  

Year:  2022        PMID: 36171295     DOI: 10.1038/s10038-022-01081-6

Source DB:  PubMed          Journal:  J Hum Genet        ISSN: 1434-5161            Impact factor:   3.755


  39 in total

1.  Analyzing the Genetic Spectrum of Vascular Anomalies with Overgrowth via Cancer Genomics.

Authors:  Dawn H Siegel; Catherine E Cottrell; Jenna L Streicher; Kala F Schilter; Donald G Basel; Eulalia Baselga; Patricia E Burrows; Heather M Ciliberto; Katinka A Vigh-Conrad; Lawrence F Eichenfield; Kristen E Holland; Marcia Hogeling; John N Jensen; Michael E Kelly; Wendy Kim; David M King; Catherine McCuaig; Katherine A Mueller; Elena Pope; Julie Powell; Harper Price; Jack E Steiner; Ilona J Frieden; Megha M Tollefson; Beth A Drolet
Journal:  J Invest Dermatol       Date:  2017-11-22       Impact factor: 8.551

Review 2.  mTOR, translational control and human disease.

Authors:  Andrew R Tee; John Blenis
Journal:  Semin Cell Dev Biol       Date:  2004-12-31       Impact factor: 7.727

3.  Pulmonary arterial hypertension in patients with slow-flow vascular malformations.

Authors:  Moisés Rodríguez-Mañero; Leyre Aguado; Pedro Redondo
Journal:  Arch Dermatol       Date:  2010-12

4.  Somatic PIK3CA mutations as a driver of sporadic venous malformations.

Authors:  Pau Castel; F Javier Carmona; Joaquim Grego-Bessa; Michael F Berger; Agnès Viale; Kathryn V Anderson; Silvia Bague; Maurizio Scaltriti; Cristina R Antonescu; Eulàlia Baselga; José Baselga
Journal:  Sci Transl Med       Date:  2016-03-30       Impact factor: 17.956

5.  Using Drosophila melanogaster as a Model for Genotoxic Chemical Mutational Studies with a New Program, SnpSift.

Authors:  Pablo Cingolani; Viral M Patel; Melissa Coon; Tung Nguyen; Susan J Land; Douglas M Ruden; Xiangyi Lu
Journal:  Front Genet       Date:  2012-03-15       Impact factor: 4.599

6.  Mutations in STAMBP, encoding a deubiquitinating enzyme, cause microcephaly-capillary malformation syndrome.

Authors:  Laura M McDonell; Ghayda M Mirzaa; Diana Alcantara; Jeremy Schwartzentruber; Melissa T Carter; Leo J Lee; Carol L Clericuzio; John M Graham; Deborah J Morris-Rosendahl; Tilman Polster; Gyula Acsadi; Sharron Townshend; Simon Williams; Anne Halbert; Bertrand Isidor; Albert David; Christopher D Smyser; Alex R Paciorkowski; Marcia Willing; John Woulfe; Soma Das; Chandree L Beaulieu; Janet Marcadier; Michael T Geraghty; Brendan J Frey; Jacek Majewski; Dennis E Bulman; William B Dobyns; Mark O'Driscoll; Kym M Boycott
Journal:  Nat Genet       Date:  2013-03-31       Impact factor: 38.330

7.  ClinVar: public archive of interpretations of clinically relevant variants.

Authors:  Melissa J Landrum; Jennifer M Lee; Mark Benson; Garth Brown; Chen Chao; Shanmuga Chitipiralla; Baoshan Gu; Jennifer Hart; Douglas Hoffman; Jeffrey Hoover; Wonhee Jang; Kenneth Katz; Michael Ovetsky; George Riley; Amanjeev Sethi; Ray Tully; Ricardo Villamarin-Salomon; Wendy Rubinstein; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

8.  Sirolimus is efficacious in treatment for extensive and/or complex slow-flow vascular malformations: a monocentric prospective phase II study.

Authors:  Jennifer Hammer; Emmanuel Seront; Steven Duez; Sophie Dupont; An Van Damme; Sandra Schmitz; Claire Hoyoux; Caroline Chopinet; Philippe Clapuyt; Frank Hammer; Miikka Vikkula; Laurence M Boon
Journal:  Orphanet J Rare Dis       Date:  2018-10-29       Impact factor: 4.123

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