Literature DB >> 36169316

Salmonella enterica Newserovar Abeokuta Genome Sequence, Strain OG19FER4 Isolated from Poultry Feed in Nigeria.

Idowu O Fagbamila1, Alejandra Hernandez-Segura2, Maaike van den Beld2, Kirsten Mooijman3, Massimiliano Orsini4, Olawunmi T Ajayi1, Sati Ngulukun1, Alexander Ray Jambalang1, Nancy Sati1, Paulinus Emennaa1, Paul I Ankeli1, Maryam Muhammad1, Lisa Barco4.   

Abstract

This report announces the genome of a newly confirmed Salmonella serovar (Salmonella enterica serovar Abeokuta) that was isolated from a poultry feed sample collected on a farm in Abeokuta, capital of Ogun State in Nigeria. Salmonella Abeokuta has not been identified outside Nigeria, nor does it appear to be a cause for concern for animal and human health.

Entities:  

Year:  2022        PMID： 36169316      PMCID： PMC9584224          DOI： 10.1128/mra.00489-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  14 in total

1.  SeqSero2: Rapid and Improved Salmonella Serotype Determination Using Whole-Genome Sequencing Data.

Authors:  Shaokang Zhang; Hendrik C den Bakker; Shaoting Li; Jessica Chen; Blake A Dinsmore; Charlotte Lane; A C Lauer; Patricia I Fields; Xiangyu Deng
Journal:  Appl Environ Microbiol       Date:  2019-11-14       Impact factor: 4.792

2.  The first attempt of an active integrated laboratory-based Salmonella surveillance programme in the north-eastern region of Nigeria.

Authors:  I Raufu; V Bortolaia; C A Svendsen; J A Ameh; A G Ambali; F M Aarestrup; R S Hendriksen
Journal:  J Appl Microbiol       Date:  2013-08-13       Impact factor: 3.772

3.  The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity.

Authors:  Zhemin Zhou; Nabil-Fareed Alikhan; Khaled Mohamed; Yulei Fan; Mark Achtman
Journal:  Genome Res       Date:  2019-12-06       Impact factor: 9.043

4.  CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

Authors:  Donovan H Parks; Michael Imelfort; Connor T Skennerton; Philip Hugenholtz; Gene W Tyson
Journal:  Genome Res       Date:  2015-05-14       Impact factor: 9.043

Review 5.  Global burden of invasive nontyphoidal Salmonella disease, 2010(1).

Authors:  Trong T Ao; Nicholas A Feasey; Melita A Gordon; Karen H Keddy; Frederick J Angulo; John A Crump
Journal:  Emerg Infect Dis       Date:  2015-06       Impact factor: 6.883

6.  Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Authors:  Ryan R Wick; Louise M Judd; Claire L Gorrie; Kathryn E Holt
Journal:  PLoS Comput Biol       Date:  2017-06-08       Impact factor: 4.475

7.  fastp: an ultra-fast all-in-one FASTQ preprocessor.

Authors:  Shifu Chen; Yanqing Zhou; Yaru Chen; Jia Gu
Journal:  Bioinformatics       Date:  2018-09-01       Impact factor: 6.937

8.  HierCC: A multi-level clustering scheme for population assignments based on core genome MLST.

Authors:  Zhemin Zhou; Jane Charlesworth; Mark Achtman
Journal:  Bioinformatics       Date:  2021-04-06       Impact factor: 6.937

9.  ResFinder - an open online resource for identification of antimicrobial resistance genes in next-generation sequencing data and prediction of phenotypes from genotypes.

Authors:  Alfred Ferrer Florensa; Rolf Sommer Kaas; Philip Thomas Lanken Conradsen Clausen; Derya Aytan-Aktug; Frank M Aarestrup
Journal:  Microb Genom       Date:  2022-01

10.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971
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