Literature DB >> 36165648

Study of Complete Genome Sequence of Uncultivated Hyphomonadaceae sp.

Xhesida Ajvazi1, Lucas Serra Moncadas2, Adrian-Stefan Andrei2.   

Abstract

We report here a complete metagenome-assembled genome sequence belonging to the Proteobacteria phylum within the Hyphomonadaceae family. The circular chromosome was obtained from a metagenomic long-read sequencing run and displays a length of 4.1 Mbp along with a GC content of 62.5% at a coverage of 81×.

Entities:  

Year:  2022        PMID： 36165648      PMCID： PMC9584324          DOI： 10.1128/mra.00765-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  9 in total

1.  Prokka: rapid prokaryotic genome annotation.

Authors:  Torsten Seemann
Journal:  Bioinformatics       Date:  2014-03-18       Impact factor: 6.937

2.  metaFlye: scalable long-read metagenome assembly using repeat graphs.

Authors:  Mikhail Kolmogorov; Derek M Bickhart; Bahar Behsaz; Alexey Gurevich; Mikhail Rayko; Sung Bong Shin; Kristen Kuhn; Jeffrey Yuan; Evgeny Polevikov; Timothy P L Smith; Pavel A Pevzner
Journal:  Nat Methods       Date:  2020-10-05       Impact factor: 28.547

3.  Systematic and quantitative view of the antiviral arsenal of prokaryotes.

Authors:  Florian Tesson; Alexandre Hervé; Ernest Mordret; Marie Touchon; Camille d'Humières; Jean Cury; Aude Bernheim
Journal:  Nat Commun       Date:  2022-05-10       Impact factor: 17.694

Review 4.  BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences.

Authors:  Minoru Kanehisa; Yoko Sato; Kanae Morishima
Journal:  J Mol Biol       Date:  2015-11-14       Impact factor: 5.469

5.  CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

Authors:  Donovan H Parks; Michael Imelfort; Connor T Skennerton; Philip Hugenholtz; Gene W Tyson
Journal:  Genome Res       Date:  2015-05-14       Impact factor: 9.043

6.  GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.

Authors:  Pierre-Alain Chaumeil; Aaron J Mussig; Philip Hugenholtz; Donovan H Parks
Journal:  Bioinformatics       Date:  2019-11-15       Impact factor: 6.937

7.  Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns.

Authors:  J L Weissman; Shengwei Hou; Jed A Fuhrman
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-23       Impact factor: 12.779

8.  The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.

Authors:  Christian Quast; Elmar Pruesse; Pelin Yilmaz; Jan Gerken; Timmy Schweer; Pablo Yarza; Jörg Peplies; Frank Oliver Glöckner
Journal:  Nucleic Acids Res       Date:  2012-11-28       Impact factor: 16.971

9.  Pfam: the protein families database.

Authors:  Robert D Finn; Alex Bateman; Jody Clements; Penelope Coggill; Ruth Y Eberhardt; Sean R Eddy; Andreas Heger; Kirstie Hetherington; Liisa Holm; Jaina Mistry; Erik L L Sonnhammer; John Tate; Marco Punta
Journal:  Nucleic Acids Res       Date:  2013-11-27       Impact factor: 16.971
  9 in total

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