Literature DB >> 36165646

Complete Genome Sequence of Lactiplantibacillus plantarum Strain DM083 Isolated from Human Tongue Coating.

Do-Young Park1, Jiyoung Hwang1, Yunji Kim2, Young-Youn Kim2, Hye-Sung Kim2, Inseong Hwang1.   

Abstract

We isolated Lactiplantibacillus plantarum DM083 from the human tongue coating to establish a strain library for oral probiotics. It has a single circular 3,197,299 bp chromosome with a guanine-cytosine (GC) content of 44.6% without plasmids. Importantly, the genome is devoid of the antimicrobial resistance gene, satisfying the minimum safety requirement for probiotics.

Entities:  

Year:  2022        PMID： 36165646      PMCID： PMC9583807          DOI： 10.1128/mra.00675-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  14 in total

1.  Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.

Authors:  Chen-Shan Chin; David H Alexander; Patrick Marks; Aaron A Klammer; James Drake; Cheryl Heiner; Alicia Clum; Alex Copeland; John Huddleston; Evan E Eichler; Stephen W Turner; Jonas Korlach
Journal:  Nat Methods       Date:  2013-05-05       Impact factor: 28.547

2.  Prokka: rapid prokaryotic genome annotation.

Authors:  Torsten Seemann
Journal:  Bioinformatics       Date:  2014-03-18       Impact factor: 6.937

3.  A large-scale evaluation of algorithms to calculate average nucleotide identity.

Authors:  Seok-Hwan Yoon; Sung-Min Ha; Jeongmin Lim; Soonjae Kwon; Jongsik Chun
Journal:  Antonie Van Leeuwenhoek       Date:  2017-02-15       Impact factor: 2.271

4.  Interactions between probiotic and oral pathogenic strains.

Authors:  Noémi N Gönczi; Orsolya Strang; Zoltán Bagi; Gábor Rákhely; Kornél L Kovács
Journal:  Biol Futur       Date:  2021-06-02

5.  Probiotics and oral health.

Authors:  Anna Haukioja
Journal:  Eur J Dent       Date:  2010-07

6.  Characterization of oral lactobacilli as potential probiotics for oral health.

Authors:  P Kõll; R Mändar; H Marcotte; E Leibur; M Mikelsaar; L Hammarström
Journal:  Oral Microbiol Immunol       Date:  2008-04

7.  Identification of acquired antimicrobial resistance genes.

Authors:  Ea Zankari; Henrik Hasman; Salvatore Cosentino; Martin Vestergaard; Simon Rasmussen; Ole Lund; Frank M Aarestrup; Mette Voldby Larsen
Journal:  J Antimicrob Chemother       Date:  2012-07-10       Impact factor: 5.790

8.  InterProScan 5: genome-scale protein function classification.

Authors:  Philip Jones; David Binns; Hsin-Yu Chang; Matthew Fraser; Weizhong Li; Craig McAnulla; Hamish McWilliam; John Maslen; Alex Mitchell; Gift Nuka; Sebastien Pesseat; Antony F Quinn; Amaia Sangrador-Vegas; Maxim Scheremetjew; Siew-Yit Yong; Rodrigo Lopez; Sarah Hunter
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

9.  Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.

Authors:  Bruce J Walker; Thomas Abeel; Terrance Shea; Margaret Priest; Amr Abouelliel; Sharadha Sakthikumar; Christina A Cuomo; Qiandong Zeng; Jennifer Wortman; Sarah K Young; Ashlee M Earl
Journal:  PLoS One       Date:  2014-11-19       Impact factor: 3.240

10.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971
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