Literature DB >> 36163521

Theoretical study of glycoluril by highly symmetrical magnesium oxide Mg12O12 nanostructure: adsorption, detection, SERS enhancement, and electrical conductivity study.

Jamelah S Al-Otaibi1, Y Sheena Mary2, Yohannan Shyma Mary2, Nivedita Acharjee3, David G Churchill4,5.   

Abstract

Using metal substrates that are nanoscale in size, surface-enhanced Raman scattering (SERS) is a technique for enhancing the Raman signal of biomolecules. Numerous industries including sensing materials, adsorption and medical devices, use nanomaterials like nanocages and nanoclusters. To discover a possible novel sensor platform involving a small metal cluster and a curved rigid substrate, we used density functional theoretical (DFT) simulations to explore the adsorption of glycoluril (GLC), a prospective drug intermediate, on a pure magnesium oxide cage (Mg12O12). This well defined cage was used as (i) an exact probable structure that could be used as well as (ii) a general model for MgO nanostructures. We also investigated the mono Al-doped Mg12O12 nanocage version Mg11AlO12. All computations were performed at the M06-2X level of theory. The GLC binds to the Mg12O12 nanocage by way of strong donor-acceptor interactions. The adsorption is releasing - 45.80 kcal mol-1 of energy. Due to Al doping, the energy gap of GLC-Mg11AlO12 (1.91 eV) is reduced from that of GLC-Mg12O12 (4.28 eV) and hence there is an increase in electrical conductivity of GLC-Mg11AlO12. The electronic change in the nanocage's conductivity can be transformed into an electrical signal which can be used to detect the presence of the drug analyte. In addition, when a GLC molecule is present, the work function of the nanocage is also reduced. The MgO nanocage, we conclude, is a work function type as well as a possible electronic sensor for GLC drug detection. GLC desorption from the Mg11AlO12 surface recovers more quickly in comparison with Mg12O12 recovery time. The AIM and NCIs assessed in this study were performed to help analyze the electronic structures of the complexes. Our findings pave the possibility for Mg11AlO12 nanostructures to be used in drug recognition.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Aluminum dopant atom; DFT; Glycoluril; Nanocages; Non-covalent

Mesh:

Substances:

Year:  2022        PMID: 36163521     DOI: 10.1007/s00894-022-05332-3

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   2.172


  11 in total

1.  Proof of single-molecule sensitivity in surface enhanced Raman scattering (SERS) by means of a two-analyte technique.

Authors:  E C Le Ru; M Meyer; P G Etchegoin
Journal:  J Phys Chem B       Date:  2006-02-02       Impact factor: 2.991

Review 2.  Fabrication and SERS properties of complex and organized nanoparticle plasmonic clusters stable in solution.

Authors:  Maria Blanco-Formoso; Nicolas Pazos-Perez; Ramon A Alvarez-Puebla
Journal:  Nanoscale       Date:  2020-07-09       Impact factor: 7.790

3.  Designing surface-enhanced Raman scattering (SERS) platforms beyond hotspot engineering: emerging opportunities in analyte manipulations and hybrid materials.

Authors:  Hiang Kwee Lee; Yih Hong Lee; Charlynn Sher Lin Koh; Gia Chuong Phan-Quang; Xuemei Han; Chee Leng Lay; Howard Yi Fan Sim; Ya-Chuan Kao; Qi An; Xing Yi Ling
Journal:  Chem Soc Rev       Date:  2019-02-04       Impact factor: 54.564

4.  Structures and stabilities of (MgO)n nanoclusters.

Authors:  Mingyang Chen; Andrew R Felmy; David A Dixon
Journal:  J Phys Chem A       Date:  2014-04-21       Impact factor: 2.781

5.  Accurate adsorption energies for small molecules on oxide surfaces: CH4 /MgO(001) and C2 H6 /MgO(001).

Authors:  A Daniel Boese; Joachim Sauer
Journal:  J Comput Chem       Date:  2016-08-02       Impact factor: 3.376

6.  An in silico approach to identification, categorization and prediction of nucleic acid binding proteins.

Authors:  Lei Xu; Shanshan Jiang; Jin Wu; Quan Zou
Journal:  Brief Bioinform       Date:  2021-05-20       Impact factor: 11.622

7.  Acyclic Cucurbit[n]uril-type Receptors: Preparation, Molecular Recognition Properties and Biological Applications.

Authors:  Shweta Ganapati; Lyle Isaacs
Journal:  Isr J Chem       Date:  2017-11-14       Impact factor: 3.333

8.  Biocompatible Superparamagnetic Europium-Doped Iron Oxide Nanoparticle Clusters as Multifunctional Nanoprobes for Multimodal In Vivo Imaging.

Authors:  Tingting Zhang; Zhijie Wang; Huijing Xiang; Xue Xu; Jing Zou; Chichong Lu
Journal:  ACS Appl Mater Interfaces       Date:  2021-07-20       Impact factor: 9.229

9.  An integrative reverse vaccinology, immunoinformatic, docking and simulation approaches towards designing of multi-epitopes based vaccine against monkeypox virus.

Authors:  Asad Ullah; Farah Ali Shahid; Mahboob Ul Haq; Muhammad Tahir Ul Qamar; Muhammad Irfan; Bilal Shaker; Sajjad Ahmad; Faris Alrumaihi; Khaled S Allemailem; Ahmad Almatroudi
Journal:  J Biomol Struct Dyn       Date:  2022-09-21       Impact factor: 5.235

10.  A CRISPR-based and post-amplification coupled SARS-CoV-2 detection with a portable evanescent wave biosensor.

Authors:  Yihan Yang; Jinchuan Liu; Xiaohong Zhou
Journal:  Biosens Bioelectron       Date:  2021-06-07       Impact factor: 10.618

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