Literature DB >> 36160967

Plant protein-coding gene families: Their origin and evolution.

Yuanpeng Fang1, Junmei Jiang2, Xiaolong Hou1, Jiyuan Guo3, Xiangyang Li2, Degang Zhao4,5, Xin Xie1,5.   

Abstract

Steady advances in genome sequencing methods have provided valuable insights into the evolutionary processes of several gene families in plants. At the core of plant biodiversity is an extensive genetic diversity with functional divergence and expansion of genes across gene families, representing unique phenomena. The evolution of gene families underpins the evolutionary history and development of plants and is the subject of this review. We discuss the implications of the molecular evolution of gene families in plants, as well as the potential contributions, challenges, and strategies associated with investigating phenotypic alterations to explain the origin of plants and their tolerance to environmental stresses.
Copyright © 2022 Fang, Jiang, Hou, Guo, Li, Zhao and Xie.

Entities:  

Keywords:  gene duplication; gene families; gene loss; molecular evolution; plant evolution

Year:  2022        PMID: 36160967      PMCID: PMC9490259          DOI: 10.3389/fpls.2022.995746

Source DB:  PubMed          Journal:  Front Plant Sci        ISSN: 1664-462X            Impact factor:   6.627


  83 in total

1.  Evolution of the YABBY gene family in seed plants.

Authors:  Cédric Finet; Sandra K Floyd; Stephanie J Conway; Bojian Zhong; Charles P Scutt; John L Bowman
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2.  Comparative phylogenetic analysis of aquaporins provides insight into the gene family expansion and evolution in plants and their role in drought tolerant and susceptible chickpea cultivars.

Authors:  Athar Hussain; Rabbia Tanveer; Ghulam Mustafa; Muhammed Farooq; Imran Amin; Shahid Mansoor
Journal:  Genomics       Date:  2019-02-28       Impact factor: 5.736

3.  Hybrid speciation via inheritance of alternate alleles of parental isolating genes.

Authors:  Zefu Wang; Yuanzhong Jiang; Hao Bi; Zhiqiang Lu; Yazhen Ma; Xiaoyue Yang; Ningning Chen; Bin Tian; Bingbing Liu; Xingxing Mao; Tao Ma; Stephen P DiFazio; Quanjun Hu; Richard J Abbott; Jianquan Liu
Journal:  Mol Plant       Date:  2020-11-18       Impact factor: 13.164

4.  Unraveling the evolution and regulation of the alternative oxidase gene family in plants.

Authors:  Xiao-jun Pu; Xin Lv; Hong-hui Lin
Journal:  Dev Genes Evol       Date:  2015-10-05       Impact factor: 0.900

5.  Genome-wide analysis of MIKC-type MADS-box genes in wheat: pervasive duplications, functional conservation and putative neofunctionalization.

Authors:  Susanne Schilling; Alice Kennedy; Sirui Pan; Lars S Jermiin; Rainer Melzer
Journal:  New Phytol       Date:  2019-10-01       Impact factor: 10.151

6.  Analysis of Three Sugarcane Homo/Homeologous Regions Suggests Independent Polyploidization Events of Saccharum officinarum and Saccharum spontaneum.

Authors:  Mariane de Mendonça Vilela; Luiz Eduardo Del Bem; Marie-Anne Van Sluys; Nathalia de Setta; João Paulo Kitajima; Guilherme Marcelo Queiroga Cruz; Danilo Augusto Sforça; Anete Pereira de Souza; Paulo Cavalcanti Gomes Ferreira; Clícia Grativol; Claudio Benicio Cardoso-Silva; Renato Vicentini; Michel Vincentz
Journal:  Genome Biol Evol       Date:  2017-02-01       Impact factor: 3.416

7.  Polyploidy Index and Its Implications for the Evolution of Polyploids.

Authors:  Jinpeng Wang; Jun Qin; Pengchuan Sun; Xuelian Ma; Jigao Yu; Yuxian Li; Sangrong Sun; Tianyu Lei; Fanbo Meng; Chendan Wei; Xinyu Li; He Guo; Xiaojian Liu; Ruiyan Xia; Li Wang; Weina Ge; Xiaoming Song; Lan Zhang; Di Guo; Jinyu Wang; Shoutong Bao; Shan Jiang; Yishan Feng; Xueping Li; Andrew H Paterson; Xiyin Wang
Journal:  Front Genet       Date:  2019-09-10       Impact factor: 4.599

8.  Multifunctional evolution of B and AGL6 MADS box genes in orchids.

Authors:  Hsing-Fun Hsu; Wei-Han Chen; Yi-Hsuan Shen; Wei-Han Hsu; Wan-Ting Mao; Chang-Hsien Yang
Journal:  Nat Commun       Date:  2021-02-10       Impact factor: 14.919

9.  Endosperm Evolution by Duplicated and Neofunctionalized Type I MADS-Box Transcription Factors.

Authors:  Yichun Qiu; Claudia Köhler
Journal:  Mol Biol Evol       Date:  2022-01-07       Impact factor: 16.240

10.  PlantGF: an analysis and annotation platform for plant gene families.

Authors:  Jiaxuan Li; Shuai Yang; Xiaojie Yang; Hui Wu; Heng Tang; Long Yang
Journal:  Database (Oxford)       Date:  2022-02-02       Impact factor: 4.462

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