Literature DB >> 36158636

VERTICOX: Vertically Distributed Cox Proportional Hazards Model Using the Alternating Direction Method of Multipliers.

Wenrui Dai1, Xiaoqian Jiang1, Luca Bonomi2, Yong Li3, Hongkai Xiong3, Lucila Ohno-Machado2.   

Abstract

The Cox proportional hazards model is a popular semi-parametric model for survival analysis. In this paper, we aim at developing a federated algorithm for the Cox proportional hazards model over vertically partitioned data (i.e., data from the same patient are stored at different institutions). We propose a novel algorithm, namely VERTICOX, to obtain the global model parameters in a distributed fashion based on the Alternating Direction Method of Multipliers (ADMM) framework. The proposed model computes intermediary statistics and exchanges them to calculate the global model without collecting individual patient-level data. We demonstrate that our algorithm achieves equivalent accuracy for the estimation of model parameters and statistics to that of its centralized realization. The proposed algorithm converges linearly under the ADMM framework. Its computational complexity and communication costs are polynomially and linearly associated with the number of subjects, respectively. Experimental results show that VERTICOX can achieve accurate model parameter estimation to support federated survival analysis over vertically distributed data by saving bandwidth and avoiding exchange of information about individual patients. The source code for VERTICOX is available at: https://github.com/daiwenrui/VERTICOX.

Entities:  

Keywords:  Cox proportional hazards model; Federated survival analysis; alternating direction method of multipliers; privacy protection; vertically partitioned data

Year:  2020        PMID: 36158636      PMCID: PMC9491599          DOI: 10.1109/tkde.2020.2989301

Source DB:  PubMed          Journal:  IEEE Trans Knowl Data Eng        ISSN: 1041-4347            Impact factor:   9.235


  17 in total

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Journal:  Eur J Cancer       Date:  2006-10-02       Impact factor: 9.162

5.  Survival Analysis with Electronic Health Record Data: Experiments with Chronic Kidney Disease.

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8.  VERTIcal Grid lOgistic regression (VERTIGO).

Authors:  Yong Li; Xiaoqian Jiang; Shuang Wang; Hongkai Xiong; Lucila Ohno-Machado
Journal:  J Am Med Inform Assoc       Date:  2015-11-09       Impact factor: 4.497

9.  Grid Binary LOgistic REgression (GLORE): building shared models without sharing data.

Authors:  Yuan Wu; Xiaoqian Jiang; Jihoon Kim; Lucila Ohno-Machado
Journal:  J Am Med Inform Assoc       Date:  2012-04-17       Impact factor: 4.497

10.  pSCANNER: patient-centered Scalable National Network for Effectiveness Research.

Authors:  Lucila Ohno-Machado; Zia Agha; Douglas S Bell; Lisa Dahm; Michele E Day; Jason N Doctor; Davera Gabriel; Maninder K Kahlon; Katherine K Kim; Michael Hogarth; Michael E Matheny; Daniella Meeker; Jonathan R Nebeker
Journal:  J Am Med Inform Assoc       Date:  2014-04-29       Impact factor: 4.497

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