Sheeba Rehman1,2, Suman Bishnoi2, Rajarshi Roy2, Anshu Kumari3, Harikrishnan Jayakumar2, Sharad Gupta2, Parimal Kar2, Asit K Pattnaik4, Debasis Nayak1,2. 1. Department of Biological Sciences, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri Bhopal 462066, Madhya Pradesh, India. 2. Department of Biosciences and Biomedical Engineering, Indian Institute of Technology Indore, Indore 453552, Madhya Pradesh, India. 3. School of Medicine, University of Maryland Baltimore, Baltimore, Maryland 21201, United States. 4. School of Veterinary Medicine and Biomedical Sciences, Nebraska Center for Virology, University of Nebraska-Lincoln, 109 Morrison Center, Lincoln, Nebraska 68583-0900, United States.
Abstract
Nanoparticles (NPs) made of metals, polymers, micelles, and liposomes are increasingly being used in various biomedical applications. However, most of these NPs are hazardous for long- and short-term use and hence have restricted biomedical applications. Therefore, naturally derived, biocompatible, and biodegradable nanoconstructs are being explored for such applications. Inspired by the biology of viruses, researchers are exploring the viral proteins that hold considerable promise in biomedical applications. The viral proteins are highly stable and further amenable to suit specific biological applications. Among various viral proteins, vesicular stomatitis virus glycoprotein (VSV-G) has emerged as one of the most versatile platforms for biomedical applications. Starting with their first major use in lentivirus/retrovirus packaging systems, the VSV-G-based reagents have been tested for diverse biomedical use, many of which are at various stages of clinical trials. This manuscript discusses the recent advancements in the use of the VSV-G-based reagents in medical, biological research, and clinical applications particularly highlighting emerging applications in biomedical imaging.
Nanoparticles (NPs) made of metals, polymers, micelles, and liposomes are increasingly being used in various biomedical applications. However, most of these NPs are hazardous for long- and short-term use and hence have restricted biomedical applications. Therefore, naturally derived, biocompatible, and biodegradable nanoconstructs are being explored for such applications. Inspired by the biology of viruses, researchers are exploring the viral proteins that hold considerable promise in biomedical applications. The viral proteins are highly stable and further amenable to suit specific biological applications. Among various viral proteins, vesicular stomatitis virus glycoprotein (VSV-G) has emerged as one of the most versatile platforms for biomedical applications. Starting with their first major use in lentivirus/retrovirus packaging systems, the VSV-G-based reagents have been tested for diverse biomedical use, many of which are at various stages of clinical trials. This manuscript discusses the recent advancements in the use of the VSV-G-based reagents in medical, biological research, and clinical applications particularly highlighting emerging applications in biomedical imaging.
Vesicular stomatitis virus
(VSV) is an enveloped virus that belongs
to the Rhabdoviridae family. Vulnerable hosts for VSV include cattle,
horses, and pigs. The negative-sense single-stranded RNA genome of
the virus encodes for five proteins found in the gene order: nucleoprotein
(N), phosphoprotein (P), matrix protein (M), glycoprotein (G), and
large protein (L)[1] (Figure ). The simplicity of its genomic organization
and the ease of growing the virus to high titers in most mammalian
cells have propelled VSV as a workhorse for the understanding of myriad
aspects of cellular and viral processes. The VSV glycoprotein VSV-G
is the determinant for viral attachment and entry into susceptible
host cells. The VSV-G contains ∼500 amino acids and is post-translationally
modified with N-linked glycosylation and fatty acid addition. In the
matured virion, the protein remains in trimeric and fusogenic form.
This form of the protein enables viral attachment to the host cell
receptors and promotes virus entry via a clathrin-mediated endocytic
mechanism. Continued research in molecular virology, viral protein
structure, host responses to viral infections and viral pathogenesis,
etc. has resulted in a detailed understanding of the biochemical and
biophysical properties of VSV-G protein and its associated functions.
Additionally, the ease of production, purification, and customization
processes has made the VSV-G-based platform an attractive tool for
various biomedical applications.
Figure 1
Schematic of wild-type VSV and VSV-G-based
nanocarrier. The bullet-shaped
VSV genome encodes five proteins: polymerase (L), nucleoprotein (N),
phosphoprotein (P), matrix protein (M), and glycoprotein (G). It serves
as a platform for bioengineering from VSV-G for different biological
applications.
Schematic of wild-type VSV and VSV-G-based
nanocarrier. The bullet-shaped
VSV genome encodes five proteins: polymerase (L), nucleoprotein (N),
phosphoprotein (P), matrix protein (M), and glycoprotein (G). It serves
as a platform for bioengineering from VSV-G for different biological
applications.Although VSV has been exploited
to understand many important aspects
of cellular, molecular, and viral processes, two unique aspects of
the biology of VSV have led to significant advances in studies on
many other viruses. The early observations that VSV incorporating
the envelope proteins of other viruses can be readily generated from
cells coinfected with the viruses[2] firmly
established the concept of “pseudotypes” proposed previously.[3] With the ability to manipulate the VSV genome
to generate recombinant viruses lacking the viral G protein, pseudotype
VSVs incorporating envelope proteins of different families of viruses
have been generated in recent years. These studies have led to better
understanding of the entry mechanisms of viruses, identifying receptors,
generating live viral vaccine vectors, developing virus-neutralization
tests, and identifying neutralizing antibodies, as well as developing
pseudotype viruses for studies under low-containment facilities for
viruses that otherwise require high-containment facilities. Additionally,
the use of VSV-G protein in pseudotyping to generate stable, high
titers of lentiviral vectors with broad cell tropism[4] has revolutionized the field of gene and cell therapy.The other unique aspect of VSV-G protein is its ability to generate
virus-like particles (VLPs) when ectopically expressed in a variety
of eukaryotic cells. These VLPs contain the viral G protein on the
envelope and can incorporate cytoplasmic contents of cells from which
these VLPs are produced. These properties have been exploited to produce
VLPs that can package proteins, therapeutic molecules, large macromolecular
complexes such as CRISPR-Cas9 ribonucleoprotein complexes, and naked
DNA.[5] In addition, VSV-G has been modified
to target to specific cell types. Interestingly, when VSV-G protein
was expressed from an autonomously replicating viral replicon lacking
the viral structural proteins, the G protein packaged the replicon
and generated novel infectious particles that could be propagated
in cultured cells.[6] Overall, these studies
point to the importance of VSV-G for its use in diverse areas of biomedical
research and applications. In this manuscript, we highlight the recent
development of VSV-G platforms and their biomedical applications,
particularly emphasizing its potential for biomedical imaging.
Structure and Function of VSV-G
VSV-G is a type I transmembrane
protein folded into a structure
with a short carboxy-terminal cytoplasmic tail and transmembrane domain
and an amino-terminal ectodomain representing the bulk of the protein.
It exists in a dynamic equilibrium between monomeric and trimeric
forms both on the viral envelope and in infected cells; however, the
biologically active form of the protein is considered to be trimeric.[7] The cytoplasmic domain of VSV-G interacts with
the M protein for efficient virus assembly, although modifications
of this domain including deletions and replacements with those from
other viral and nonviral sequences can lead to viral assembly. The
ectodomain is responsible for binding to the host cell receptor and
subsequent fusion with the endosomal membrane for the uncoating of
the viral genome. It also contains antibody recognition sites as well
as viral neutralizing epitopes.VSV-G is a class III fusion
protein[8] that is characterized by its pH-dependent
reversible conformational
changes between pre- and postfusion states.[9−12] This pH-dependent reversible
conformational transition is thought to be critical for its intracellular
transport in acidic compartments of the Golgi apparatus in an inactive
form to the cell surface where it exists in an active fusogenic form.[15] The crystal structures of both pre-and post-fusion
postfusion forms of VSV-G have been resolved.[17] The protein’s monomer is made up of four distinct domains.
Domain I of the VSV-G is dense with β sheets, whereas domain
II is centrally located and involved in protein trimerization. Domain
IV is the fusogenic domain that was discovered to be inserted into
the loop of the pleckstrin homology domain III.[13] VSV-G binds to host cell receptors such as low-density
lipoprotein (LDL) and its family members. During binding with the
host cell receptor, the protein undergoes significant rearrangement
and mediates membrane fusion. VSV-G remains as a trimer in the mature
virion at pH 7 in the prefusion state.[14] The large changes in the protein’s orientation are caused
by the secondary structure, a hinge region found between the pleckstrin
homology domains and the fusion domain. This rearrangement causes
the protein to transition from the prefusion to the postfusion state.
The conformational transition in VSV-G caused by low pH allows the
viral and endosomal membranes to fuse, resulting in the release of
the viral genome into the cytosol where the ribonucleoprotein complex
initiates transcription and subsequent translation of viral proteins
including VSV-G. The nascent protein is cotranslationally inserted
into membranes of the endoplasmic reticulum (ER). The ectodomain of
VSV-G undergoes post-translational modifications (PTM) in the form
of N-glycosylation at two asparagine residues. Following PTM, the
VSV-G forms microdomains at the plasma membrane that serve as sites
for virion assembly and budding. The reversible pH-dependent conformational
changes with fusogenic properties and signature sequences in its various
domains make VSV-G a unique molecular tool for researchers.
Biomedical Applications of the VSV-G
Development
of the VSV-G VLPs
Viruses
are naturally evolved nanocarriers. They efficiently transport their
genomes to specific host cells. Because a virus is an obligate intracellular
parasite, carrying the genome to the host cell is quintessential for
its replication. Most viruses have a lipid membrane (envelope) derived
from the host cell; however, some viruses are nonenveloped, with no
membrane but only the proteinaceous capsid. While protecting the genome,
the capsids or envelopes have the ability for conformational changes
to unlock and swiftly transfer the genome to the permissible cells.
The viral envelope typically consists of a lipid bilayer with transmembrane
glycoproteins embedded in it. In the case of VSV and many other negative-sense
(NS) RNA virus infections, mainly three forms of particles are produced
in the infected cells. In the majority of cases, the budding particles
carrying a full-length copy of the viral genome are mature infectious
virions. Another form, namely, defective interfering (DI) particles,
have a truncated genome package.These defective genomes have
packaging signal sequences but are deficient for self-replication
as they do not contain the necessary genes expressing viral polymerase
functions. However, these particles are structurally homologous to
the parent virus but need a helper virus for their genome replication.
The third category of particles is completely empty in nature; these
are self-assembled protein cage-like structures lacking nucleic acid
in their core. These are also structural homologues of the parent
virus and are often termed virus-like particles or VLPs. The nature
of protein-protein interactions dictates the assembling of the viral
protein subunits that form the VLPs. These structures naturally remain
hollow inside and therefore can carry specific cargo volumes. Like
the parent virion, VLPs could be either enveloped or just have a proteinaceous
capsid layer.As mentioned earlier, the VSV-G protein has the
natural ability
to assemble into VLPs when expressed in cells. Investigators have
optimized the production of VLPs based on recombinant expression of
G in numerous cell types and functionalized these for various biological
and medical applications. As the VSV glycoprotein’s structural
transitions are reversible, this property has allowed researchers
to introduce a package-specific volume of cargo/small molecules into
the VLPs, resulting in useful reagents. On the basis of these principles,
VSV-G-expressing cell lines are extensively used as a packaging system
for the production of important biological reagents such as gene delivery
platforms, gene-editing tools, mRNAs, etc.When expressed in
human or mammalian cells, VSV-G self-assembles
and is released at a very high titer in the form of lipid-bound fusogenic
nanovesicles. Several molecular tools based on VSV-G are successfully
utilized for clinical research and aptly used to package biological
materials, including small-molecule drugs, protein, peptides, DNA,
mRNA, etc., as shown in Table . Like the parent virions, these VSV-G-derived carrier nanoparticles
(NPs) undergo the same pathway for their attachment and internalization.
During endocytosis, the conventional NP formulation encounters lysosomal
hydrolase, resulting in the degradation of most of the delivery agents.
On the other hand, the VSV-G-encapsulated formulation confers endolysosomal
escape to deliver cargo into the cytoplasm of target cells. Besides
these, VSV-G VLPs have excellent biophysical properties that enable
their use at the forefront as a nanocarrier. These include stable
morphology, well-known surface properties, ease of large production,
a higher surface area-to-mass ratio, and the ability to encapsulate
small molecules.
Table 1
Biomedical Applications of VSV-G VLPs
tools
short description
in vivo/in
vitro
plasmid-based gene therapy
coexpression of VSV-G and IL-12 for gene therapy
in vitro and
in vivo
viral vector pseudotypes
flaviviruses, coronaviruses, paramyxoviruses, herpes simplex
virus, and other lentiviral vectors are the gold standard; however, VSV-G lentivirus has been shown to be effective
in vivo
delivery of mRNA
VSV-G VLPs as mRNA-delivery
vehicle
in vitro
delivery of
CRISPR-Cas9
VSV-G-based
envelope carrier
in vivo
selective
delivery of protein and nucleic acids
VSV-G-established VLPs as a
delivery vehicle
in vitro
exogenous
protein delivery
protein transduction method based on VSV-G-based nanovesicles
in vitro and
in vivo
cancer immunotherapy
VSV-G expresses macrophages
acting as fusogenic cells to deliver the GOI
in vitro
and in vivo
functionalization of drug-delivery
vectors
layer-by-layer (LbL) microcarrier surface functionalized
by VSV-G to enhance cellular uptake
in vivo
Additionally, VSV-G particles are often compatible with a wide
variety of active pharmacological moieties. Because a surface-exposed
amino acid residue is amenable to further modifications and tagging,
these particles could therefore be further modified with specific
ligands and/or moieties for cell receptor targeting and site-specific
delivery of packaged formulation. Hence, a smaller quantity of drugs
is required when administered through VLPs, eliminating overdose and
offsite target-related toxic effects. Often, this could result in
cost-effective treatment. Thus, with desired modifications, these
nanovesicles have been shown to transport eukaryotic genes, mRNA,
proteins, and organelles to different mammalian cells and tissues.
Because a VSV-G VLP is functionally active like that of the parent
virion, it has emerged as a potential drug-delivery platform in recent
years.
Methods of VSV-G VLP Production
VLPs are highly organized, multiprotein hollow structures resembling
that of a natural virion. On the basis of the physical properties
of the parent virus, two significant modes are used for VLP production:
(i) in the step-down approach, the genome is depleted from the parent
virus and the VPLs are assembled, and (ii) in the step-up approach,
there is an expression of required viral proteins in a suitable host
and subsequent assembly of VLPs (Figure ). In the latter case, expressed viral proteins
self-assemble into particles. Various expression systems, including
prokaryotic, eukaryotic, and cell-free systems, have been explored
for VLP production. However, a fair understanding of the viral structural
components is essential for the selection of an appropriate expression
system. The popular expression systems include bacteria, yeast, plant,
insect, and mammalian cells.
Figure 2
Schematic representation of step-up and step-down
approaches for
the production, purification, and cargo loading in a VSV-G nanocarrier.
Step-up approach: in this process, the gene of a viral structural
protein is cloned in an expression vector for protein production on
a large scale. However, the step-down approach begins with using the
parent virus by depleting its genetic material. In the end, the protein
is collected as particles with no infectious properties. The downstream
process of purification, such as clarification, purification, and
polishing, is used to obtain the purified protein.
Schematic representation of step-up and step-down
approaches for
the production, purification, and cargo loading in a VSV-G nanocarrier.
Step-up approach: in this process, the gene of a viral structural
protein is cloned in an expression vector for protein production on
a large scale. However, the step-down approach begins with using the
parent virus by depleting its genetic material. In the end, the protein
is collected as particles with no infectious properties. The downstream
process of purification, such as clarification, purification, and
polishing, is used to obtain the purified protein.Although the bacterial system is the most commonly used recombinant
protein expression platform, several limiting factors such as lack
of or improper PTM, contamination of endotoxins, incomplete disulfide-bond
formation, and protein solubility restrict the use of a bacterial
expression system for VLP production of enveloped viruses, including
VSV-G. Similarly, yeast expression systems, such as those of Saccharomyces cerevisiae and Pichia
pastoris, are not yet optimized for VSV-G VLP production.
Although genome manipulation of these hosts has resulted in improved
PTM of the desired protein, issues like protein trafficking, proper
protein folding, etc. restrict the use of the yeast system for VSV-G
VLP expression.The insect cell expression system is widely
used for generating
viral proteins on laboratory and industrial scales. The significant
advantage of this system includes PTM of the protein, like mammalian
system capability of fast and large-scale cultivations, high protein
yield, etc. Typically, this system utilizes recombinant baculovirus
as a gene expression tool. Here, the coexpression of multiple proteins
by designing polycistronic recombinant baculovirus can also be achieved.
However, the most commonly used system is the mammalian cell expression
system, where cell lines such as Chinese hamster ovary (CHO) cells,
baby hamster kidney-21 (BHK-21), CEVEC’s amniocyte production
cell line derived from human amniocytes, human embryonic kidney 293T
(HEK293T), Vero cells, etc. are routinely used. However, low protein
yield, higher production cost, long-expression time, and the possibility
to carry infection with other pathogens such as bacteria, fungi, or
viruses are potential drawbacks of mammalian cell expression systems
for generating clinical-grade VLPs. Apart from the suitability of
the platform, one of the important criteria for achieving a high titer
VLP production is the spontaneous release of VLPs from the mammalian
cell membrane. Often, eukaryotic cells pose additional challenges
in the form of host restriction factors that interfere with virus
release, which is an innate mechanism to limit viral spread. However,
VSV-G can antagonize interferon (IFN)-inducible antiviral host cell
factor tetherin (BST-2, CD317) and enhance the release of VLPs. Thus,
VSV-G can be produced in high titer even in the presence of tetherin-expressing
cells.[15]
Emergence
of VSV-G as an Accessory Tool for
Gene Therapy
Due to its broad cell tropism, VSV-G supports
efficient gene transfer into a wide range of target cells such as
neurons, bone marrow stem cells (BMSCs), rat insulinoma cell line
INS-1, etc. For the past three decades, VSV-G-based, pseudotyping
platforms to package retroviral/lentiviral vectors are being used
for stable gene transfer in eukaryotic cells.[4] The emergence of a VSV-G-based retroviral/lentiviral packaging platform
made significant improvements against murine leukemia virus-derived
vectors in two major aspects: (i) removal of the barrier of the restricted
host-cell range and (ii) production of high titer with uniformly infectious
particles. As a result, this platform revolutionized gene therapy
model studies in suitable animal hosts. Subsequently, a plethora of
basic research was completed prior to any clinical trial studies for
gene therapy. Progress in this direction led to associated technology
for surface modification of VLPs in the form of maneuvering amino
acid residues or by tagging anchor moiety to enhance gene delivery
efficiency. Further, VSV-G can form complexes with plasmid DNA, creating
fusogenic structures. These complexes show enhanced transfection properties
for gene delivery without a lipofection reagent.[5] Interestingly, the engineering of the VSV-G delivery system
has been demonstrated to improve nucleic acid transduction efficiency.
The mRNA of a particular gene is preferred because it is transient
and does not pose any risk of integration in target cells, so appropriate
delivery systems are being tested continuously. In this context, researchers
have demonstrated VSV-G-based chimeric viral particles for the delivery
and transduction of green fluorescence protein (GFP) mRNA in monocytes
and pluripotent stem cells (iPS cells).[16] Similarly, targeted delivery of small VSV-G anchored extracellular
vesicles showed superior gene transduction efficiency. Experiments
conducted by Liu et al. demonstrated that siRNA targeting programmed
death-1 (PD-L1) can also be efficiently administered in vivo in CT26
tumor-bearing mice using a VSV-G-based system.[17] This approach enabled robust silencing of PDL-1 in tumor
tissue, which in turn elevated effector CD8+ T cell function,
resulting in faster tumor clearance. Because of these excellent examples,
there is a growing interest in gene delivery using the VSV-G-based
system for a variety of biomedical applications.
VSV-G-Encapsulated Nanoformulations for Biomedical
Imaging
Biomedical imaging, mainly to detect the early stages
of cancer, is in high demand for timely therapeutic intervention.
Exogenously administered contrast agents are routinely used for in
vivo studies for mapping the contour of the developing tumor. In this
context, modified viruses are being demonstrated for the delivery
of exogenous contrast agents to aid available imaging techniques such
as positron–electron tomography (PET), magnetic resonance imaging
(MRI), and optical imaging. The success of the technique rests on
surface modification with appropriate ligands such as metal nanoparticles
and contrast agents. The use of VSV-G-based nanoparticles has recently
been demonstrated as an improved imaging carrier.[18] Currently, fluorescence imaging has emerged as an effective
noninvasive technique for cancer diagnosis in preclinical settings.
However, it is difficult to look into the human body beyond penetration
depth (1 mm) using visible radiation. However, biological tissues
are transparent in the near-infrared (NIR) range; thus, deeply buried
inhomogeneity can be observed by NIR imaging. NIR imaging offers the
advantage of minimal autofluorescence and enhanced tissue-penetration
depth (5–10 mm).[19] Also, the inclusions
of exogenous contrast agents in the NIR spectrum offer an improved
signal-to-noise ratio and a better contrast for easy diagnosis. In
this context, we recently demonstrated that fabricated NIR-active
VSV-G VLPs encapsulating indocyanine green (ICG) dye, a U.S. Food
and Drug Administration (FDA) approved contrast agent, could be used
in routine biomedical imaging. Here VSV-G VLPs were generated in the
mammalian expression system (HEK 293T cells) in the secretory form
and were purified from the conditioned media using simple ultracentrifugation
steps. These VLPs encapsulated ICG, which we termed NIR active viral
nanoconstructs (NAVNs). Compared to the free form of ICG, the VSV-G
packaged form not only enhanced the photostability of this contrast
agent but also significantly improved the targeted delivery of the
contrast agent into the cytoplasm. The NIR imaging showed enhanced
fluorescence intensity and improvement in the signal-to-noise ratio
(SNR) of NAVN-treated cells compared to free ICG. Even after 72 h
of treatment with cells, the encapsulated form was ∼60% optically
active while the free ICG activity fell below ∼20%.[18] This approach also showed dramatic improvement
in the circulating half-life of ICG in preclinical mouse model studies.
The improved circulating half-life of ICG was partly because of the
stability of the formulation in blood circulation aided by sustained
release of the drug from VLPs over time. In vivo experiments conducted
in BALB/c by our group demonstrated that free ICG was almost eliminated
from the circulation within 24 h of administration, while encapsulated
ICG remained beyond 72 h of administration (Figure ). For this study, the NAVNs and free ICG
solution were administered intravenously via tail vein in BALB/c mice.
The free ICG was given at a dose of 3 mg/kg of body weight. Fluorescence
images were taken 24 and 48 h after injection. These images were captured
at an excitation wavelength of 745 nm, emission wavelength of 840
nm, and exposure time of 2–6 s. Histopathological examination
of these mice did not show any significant cytotoxicity effect when
administered with VSV-G VLPs, thus showing the biocompatibility of
these particles in a preclinical setup. Therefore, as a proof of concept,
we demonstrate that bioengineered VSV-G encapsulating ICG could be
a superior NIR-imaging platform and has the potential for immediate
medical-imaging applications.
Figure 3
In vivo wholebody NIR imaging of the biodistribution
of free ICG
and NAVNs injected intravenously in BALB/c mice. (a) NIR fluorescence
image of mice 24 h postinjection of ICG and NAVNs. (b) NIR fluorescence
image of mice 48 h postinjection of ICG and NAVNs. (c) NIR fluorescence
image of mice dissected 48 h postinjection of NAVNs. The figure is
part of the doctoral research work carried out by Suman Bishnoi.
In vivo wholebody NIR imaging of the biodistribution
of free ICG
and NAVNs injected intravenously in BALB/c mice. (a) NIR fluorescence
image of mice 24 h postinjection of ICG and NAVNs. (b) NIR fluorescence
image of mice 48 h postinjection of ICG and NAVNs. (c) NIR fluorescence
image of mice dissected 48 h postinjection of NAVNs. The figure is
part of the doctoral research work carried out by Suman Bishnoi.
Mechanistic Insight into VSV-G ICG Interaction
To better understand the mechanism of ICG packaging, we performed
a molecular dynamics (MD) simulation to check the interaction of ICG
with VSV-G protein. MD simulations are frequently preferred to investigate
the structure and dynamics of biomolecules and various time-dependent
dynamical processes. The MD simulation approach is well-established
and suitable for elucidating the ligand-binding function, predicting
binding poses, and determining the conformational dynamics of the
binding pockets. Herein, we looked at the interactions between ICG
and VSV-G by employing molecular docking and MD simulation in conjunction
with the free energy calculation. The dye molecule (ICG) was docked
into the binding pocket of VSV-G (PDB: 5I2S) using the Schrödinger suite.
The best pose from the docking study was subjected to MD simulation
in both neutral and acidic (pH 5.0) aqueous solutions by performing
conventional molecular dynamics (cMD) and constant pH molecular dynamics
(CpHMD) using the AMBER18 suite. For cMD, before the production run,
two-step minimization followed by a stepwise heating step was performed.
In the case of CpHMD, after every 200 fs of explicit MD simulation,
the protonation change event was attempted for all possible residues
in the GB implicit model. Details of our simulation protocol can be
found in our previous studies.[20] In the
current study, we performed MD simulations for 100 ns in both the
neutral and acidic conditions, which stabilize after 55 ns, as shown
in Figure a.
Figure 4
MD simulations
of the VSV-G/ICG complex in neutral (pH 7.0, red)
and acidic (pH 5, green) conditions. (a) Time evolution of root-mean-squared
deviation (RMSD) of backbone atoms of VSV-G. (b) Time evolution of
the center of mass (CoM) distance between the protein and ICG. (c)
Superimposition of the initial conformation with the final structure
obtained from MD simulation at pH 7.0. The initial and final coordinates
of ICG are depicted in blue and green. (d) Superimposition of the
initial snapshot with the final structure obtained from the MD simulation
at pH 5, where the initial and final coordinates of ICG are in blue
and green. (e) Various components of total binding free energy (kcal/mol)
of ICG in neutral and acidic conditions.
MD simulations
of the VSV-G/ICG complex in neutral (pH 7.0, red)
and acidic (pH 5, green) conditions. (a) Time evolution of root-mean-squared
deviation (RMSD) of backbone atoms of VSV-G. (b) Time evolution of
the center of mass (CoM) distance between the protein and ICG. (c)
Superimposition of the initial conformation with the final structure
obtained from MD simulation at pH 7.0. The initial and final coordinates
of ICG are depicted in blue and green. (d) Superimposition of the
initial snapshot with the final structure obtained from the MD simulation
at pH 5, where the initial and final coordinates of ICG are in blue
and green. (e) Various components of total binding free energy (kcal/mol)
of ICG in neutral and acidic conditions.We also investigated the stability of the ICG molecule in the binding
pocket by estimating the center of the mass distance of the ligand
and the binding site residues throughout the simulation time (Figure b). In the case of
the neutral condition, ICG was found to remain tightly bound to the
binding pocket (Figure c). On the other hand, in the acidic condition (pH 5), ICG deviated
from its original binding site and remained attached to the protein’s
surface (Figure d).
This implies that, in the acidic environment, the ligand binding is
destabilized.This analysis is further complemented by estimating
the binding
free energy of the VSV-G/ICG complex using the molecular mechanics/Poisson–Boltzmann
surface area (MM/PBSA) scheme. The estimated binding free energy is
−25.16 kcal/mol in the neutral solution, almost 6 times more
favorable than the acidic state (−4.41 kcal/mol). The binding
affinity of ICG in low pH decreased significantly due to the loss
of profitable contribution from the intermolecular van der Waals and
electrostatic interactions (Figure e). Overall, the binding free energy calculations corroborate
the center of mass distance analysis.Thus, the molecular dynamics
simulation study showed that VSV-G
undergoes conformational changes in a low pH environment and triggers
the release of ICG to the cytoplasm of the target cell. Further, the
VSV-G–ICG interaction enhanced the half-life of ICG in the
cells, thereby improving the physical and optical stability of the
contrast agent. Thus, VSV-G could further be customized and engineered
by fusing NIR fluorescent protein or an antibody for in vivo imaging.[21]
Therapeutic Agent Delivery
Pharmaceutical
agents can be encapsulated in a VSV-G nanocarrier to enhance delivery
potential; for example, the partially purified VSV-G in the form of
vesicles released from a transfected cell is commonly used to encapsulate
various therapeutic agents. This system can encapsulate a diverse
array of small molecules including protein, RNA, siRNA, and ICG, including
the delivery of genome editing tools. In this context, the VSV-G platform
is explored for delivering the CRISPR-SpCas9-ribonucleoprotein complexes
(RNPs) to various transformed, pluripotent stem cell cardiomyocytes
in an in vivo model.[22] VSV-G has also been
demonstrated to package recombinant proteins by cotransfection of
VSV-G with Gag-GFP for direct delivery into the cytoplasm of target
cells.[23] Furthermore, these nanocarriers
could efficiently incorporate proteins, such as tetracycline repressor
(TetR) trans activator and murine cationic amino acid transporter-1
(mCAT-1), and the receptor of murine leukemia virus (MLV) envelope
to target cells.[24] Thus, this method of
protein transduction is a versatile tool for the transport of various
cytoplasmic, nuclear surface proteins into the target cells.
Site-Directed Modification of VSV-G for Enhanced
Delivery
VSV-derived VLPs are structurally and functionally
homologous to
their parent virions. The crystal structure of VSV-G provides detailed
information related to various domains and its associated functions,
including protein-protein interaction for multimerization, exposed
residues for immune targeting, binding and fusion loop for host cell
receptors, etc. The crystal structure further reveals the presence
of a transmembrane domain, which undergoes structural rearrangement
in response to low pH. Various modifications of VSV-G have been carried
out at the amino acid level to enhance the targeting and cargo-delivery
abilities of the nanoconstructs. Researchers have identified that
VSV-G has several feasible insertion sites between amino acids 1 and
400, which could tolerate 9-amino acid cyclin-RGD (cRGD) peptides.
Insertion of 49-amino acid echistatin (snake venom disintegrin) peptide
binding between amino acids 351 and 352 in the middle of the lateral
domain of VSV-G specifically targeted integrins expressed on the tumor
tissue.[25] On the basis of this evidence,
it is possible to customize VSV-G with an appropriate modification
of amino acid sequences to improve tissue-specific targeting of these
nanocarriers. At the postproduction stage, these nanocarriers can
also be modified by insertion or chemical conjugation of targeting
moieties at the surface of the particles.[16]Besides this, VSV-G bears a fusion-loop structure and a hydrophobic
part, potentially exposed to interact with host cellular organelles.
The structural analysis predicts the possibility of modifying individual
domains of VSV-G, keeping its self-assembling ability intact. Previous
studies have confirmed that VSV-G can be genetically engineered for
tissue targeting by incorporating collagen-binding decapeptide N-WREPGRMELN-C
showing specific attachment with the collagen matrix.[26] Likewise, the single-chain antibody fragment (scFv) of
253-amino acid peptide has also been successfully incorporated within
VSV-G for specific binding with MHC-I.[27] All of these type of modifications make VSV-G an attractive and
amenable candidate for VLP generation.
Immunogenicity
and Neurotoxicity Issues and
Possible Mitigation Strategy
Despite significant research
progress, the clinical application
of VSV-G platforms for drug delivery and biomedical imaging is limited.
This is primarily due to a strong humoral (B cell) response against
VSV-G protein. The protein has several immunodominant epitopes, including
the most potent one at the C-terminal end of the protein. Thus, VSV-G
VLPs can induce a strong humoral immune response even after a single
dose of application. The host-neutralizing antibodies (IgG) are primarily
targeted at the G protein. This strong immunogenicity leads to serum
inactivation of the VSV-G-based nanocarrier, making this platform
unsuitable for multiple applications. Importantly, like other rhabdoviruses,
VSV-G could also elicit life-long memory T cell and B cell responses.
This is a major hindrance to multidose therapeutic applications of
VSV-G-derived reagents, including the VLPs mentioned here. The other
drawback associated with the VSV-G-based application is the inherent
neurotropism associated with G.[28] Although
this attribute could be exploited for broader organ-specific applications,
including delivery to the brain, adequate modifications and amino
acid alternations are desired for such application. Unlike in a VSV-infected
host, where G is produced at a logarithmically higher scale associated
with virus replication, biomedical application of VLPs is limited
in quantity and scale and organ-specific. As a result, the chances
of neurotoxicity are minimized to tolerable limits. Deleting the specific
immunodominant epitope or alterations of a few amino acids could thus
avoid immunogenicity to a large extent. Thus, the combination of epitope
deletion and site-directed mutagenesis could make an immune-tolerable
G.[29] Moreover, the immunodominant region
of VSV-G can be switched with the serum-resistant glycoprotein protein
of other viruses.[30] We hope that, with
these strategies, both neurotoxicity and immunogenicity issues could
be addressed to a larger extent. The other approach for addressing
immunogenicity relies on switching the glycoproteins from another
serotype. VSV is prevalent in two major serotypes, VSV Indiana (VSVI) and VSV New Jersey (VSVNJ), having neutralizing
antibody responses that are not cross-reactive. These differential
immune response properties thus could be exploited for repeat applications
of a VSV-G-derived nanocarrier. Besides this approach, the glycoprotein
of other Vesiculoviruses, such as the Chandipura virus (CHPV), could
be explored in combination with VSVI and VSVNJ for multiple in vivo applications.
Conclusions
A protein-based nanocarrier holds promise for a variety of biomedical
applications, including efficient drug-delivery platforms, biomedical
imaging, gene-editing tool delivery, etc. Remarkable advancements
in molecular biology and nanotechnology centering on viral proteins
have created new approaches to delivering active pharmaceutical agents
in living systems. Many such products have entered clinical trials.
Still, this approach faces challenges. Viral proteins offer a versatile
platform ranging from vaccine development and gene therapy to drug-delivery
applications. Due to the well-studied and unique properties associated
with VSV-G, we have achieved pinpoint cell-specific targeting of pharmacological
agents. A few properties of the VSV-G, such as effective cell penetration
in the absence of endosomal sequestration, multivalence, and biocompatibility,
make this platform a valuable research tool. As discussed, VSV-G nanocarriers
can encapsulate many active molecules; still, there is room for improvement.
One major drawback lies in the immune response to G protein, preventing
multiple applications in the same host. However, epitope manipulation
and change of serotypes are postulated to tackle such issues. Finally,
we anticipate that continued future research in this direction would
make the VSV-G platform a viable option for biomedical applications
in clinical settings.
Authors: Ghiabe H Guibinga; Frederick L Hall; Erlinda M Gordon; Erkki Ruoslahti; Theodore Friedmann Journal: Mol Ther Date: 2004-01 Impact factor: 11.454
Authors: Constantin Brinkmann; Markus Hoffmann; Anastasia Lübke; Inga Nehlmeier; Annika Krämer-Kühl; Michael Winkler; Stefan Pöhlmann Journal: PLoS One Date: 2017-12-07 Impact factor: 3.240