Literature DB >> 36154194

Whole-Genome Sequencing of the Tropical Marine Bacterium Nocardiopsis dassonvillei NCIM 5124, Containing the Ectoine Biosynthesis Gene Cluster ectABC.

Pratik Kadam1, Swapnil Kajale2, Avinash Sharma2, Dhiraj Dhotre2, Vitthal Barvkar3, Yogesh Shouche2, Smita Zinjarde1.   

Abstract

The genome sequence (7,057,619 bp; GC content, 72.07%) of a tropical marine isolate, Nocardiopsis dassonvillei NCIM 5124, containing the biomedically and biotechnologically important gene cluster ectABC is reported here.

Entities:  

Year:  2022        PMID： 36154194      PMCID： PMC9584341          DOI： 10.1128/mra.00435-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  24 in total

1.  Rapid identification of filamentous actinomycetes to the genus level using genus-specific 16S rRNA gene restriction fragment patterns.

Authors:  Andrew E Cook; Paul R Meyers
Journal:  Int J Syst Evol Microbiol       Date:  2003-11       Impact factor: 2.747

2.  QUAST: quality assessment tool for genome assemblies.

Authors:  Alexey Gurevich; Vladislav Saveliev; Nikolay Vyahhi; Glenn Tesler
Journal:  Bioinformatics       Date:  2013-02-19       Impact factor: 6.937

Review 3.  Nocardiopsis species as potential sources of diverse and novel extracellular enzymes.

Authors:  Tahsin Bennur; Ameeta Ravi Kumar; Smita Zinjarde; Vaishali Javdekar
Journal:  Appl Microbiol Biotechnol       Date:  2014-09-30       Impact factor: 4.813

4.  The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.

Authors:  James J Davis; Alice R Wattam; Ramy K Aziz; Thomas Brettin; Ralph Butler; Rory M Butler; Philippe Chlenski; Neal Conrad; Allan Dickerman; Emily M Dietrich; Joseph L Gabbard; Svetlana Gerdes; Andrew Guard; Ronald W Kenyon; Dustin Machi; Chunhong Mao; Dan Murphy-Olson; Marcus Nguyen; Eric K Nordberg; Gary J Olsen; Robert D Olson; Jamie C Overbeek; Ross Overbeek; Bruce Parrello; Gordon D Pusch; Maulik Shukla; Chris Thomas; Margo VanOeffelen; Veronika Vonstein; Andrew S Warren; Fangfang Xia; Dawen Xie; Hyunseung Yoo; Rick Stevens
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

5.  Marisediminicola senii sp. nov. isolated from Queen Maud Land, Antarctica.

Authors:  Kunal Jani; Swapnil Kajale; Meghana Shetye; Shivani Palkar; Avinash Sharma
Journal:  Int J Syst Evol Microbiol       Date:  2021-02       Impact factor: 2.747

Review 6.  Nocardiopsis species: Incidence, ecological roles and adaptations.

Authors:  Tahsin Bennur; Ameeta Ravi Kumar; Smita Zinjarde; Vaishali Javdekar
Journal:  Microbiol Res       Date:  2015-03-21       Impact factor: 5.415

7.  Quorum Sensing Regulators AphA and OpaR Control Expression of the Operon Responsible for Biosynthesis of the Compatible Solute Ectoine.

Authors:  Gwendolyn J Gregory; Daniel P Morreale; Megan R Carpenter; Sai S Kalburge; E Fidelma Boyd
Journal:  Appl Environ Microbiol       Date:  2019-10-30       Impact factor: 4.792

8.  Gold nanoparticles biosynthesized by Nocardiopsis dassonvillei NCIM 5124 enhance osteogenesis in gingival mesenchymal stem cells.

Authors:  Tahsin Bennur; Vaishali Javdekar; Geetanjali B Tomar; Smita Zinjarde
Journal:  Appl Microbiol Biotechnol       Date:  2020-03-10       Impact factor: 4.813

Review 9.  Microbial production of ectoine and hydroxyectoine as high-value chemicals.

Authors:  Mengshuang Liu; Hui Liu; Meng Shi; Mingyue Jiang; Lingling Li; Yanning Zheng
Journal:  Microb Cell Fact       Date:  2021-03-26       Impact factor: 5.328

Review 10.  Natural Product Potential of the Genus Nocardiopsis.

Authors:  Alyaa Hatem Ibrahim; Samar Yehia Desoukey; Mostafa A Fouad; Mohamed Salah Kamel; Tobias A M Gulder; Usama Ramadan Abdelmohsen
Journal:  Mar Drugs       Date:  2018-04-29       Impact factor: 5.118
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