Literature DB >> 36154150

Draft Genome Sequences of 10 Multidrug-Resistant Escherichia coli Strains Isolated from Piglets in Peru.

Luis Alvarez1, Denis Carhuaricra2, Joel Palomino-Farfan1, Sonia Calle1, Lenin Maturrano2, Juan Siuce1.   

Abstract

Pathogenic Escherichia coli frequently causes diarrhea on pig farms. Here, we report the draft genome sequences of 10 strains of multidrug-resistant E. coli isolated from piglets.

Entities:  

Year:  2022        PMID： 36154150      PMCID： PMC9583804          DOI： 10.1128/mra.00706-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  8 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  QUAST: quality assessment tool for genome assemblies.

Authors:  Alexey Gurevich; Vladislav Saveliev; Nikolay Vyahhi; Glenn Tesler
Journal:  Bioinformatics       Date:  2013-02-19       Impact factor: 6.937

3.  Prokka: rapid prokaryotic genome annotation.

Authors:  Torsten Seemann
Journal:  Bioinformatics       Date:  2014-03-18       Impact factor: 6.937

4.  Economic impacts of the mortality rate for suckling pigs in the United States.

Authors:  Willard C Losinger
Journal:  J Am Vet Med Assoc       Date:  2005-09-15       Impact factor: 1.936

5.  Applying definitions for multidrug resistance, extensive drug resistance and pandrug resistance to clinically significant livestock and companion animal bacterial pathogens.

Authors:  Michael T Sweeney; Brian V Lubbers; Stefan Schwarz; Jeffrey L Watts
Journal:  J Antimicrob Chemother       Date:  2018-06-01       Impact factor: 5.790

6.  Identification of acquired antimicrobial resistance genes.

Authors:  Ea Zankari; Henrik Hasman; Salvatore Cosentino; Martin Vestergaard; Simon Rasmussen; Ole Lund; Frank M Aarestrup; Mette Voldby Larsen
Journal:  J Antimicrob Chemother       Date:  2012-07-10       Impact factor: 5.790

7.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

8.  ResFinder 4.0 for predictions of phenotypes from genotypes.

Authors:  Valeria Bortolaia; Rolf S Kaas; Etienne Ruppe; Marilyn C Roberts; Stefan Schwarz; Vincent Cattoir; Alain Philippon; Rosa L Allesoe; Ana Rita Rebelo; Alfred Ferrer Florensa; Linda Fagelhauer; Trinad Chakraborty; Bernd Neumann; Guido Werner; Jennifer K Bender; Kerstin Stingl; Minh Nguyen; Jasmine Coppens; Basil Britto Xavier; Surbhi Malhotra-Kumar; Henrik Westh; Mette Pinholt; Muna F Anjum; Nicholas A Duggett; Isabelle Kempf; Suvi Nykäsenoja; Satu Olkkola; Kinga Wieczorek; Ana Amaro; Lurdes Clemente; Joël Mossong; Serge Losch; Catherine Ragimbeau; Ole Lund; Frank M Aarestrup
Journal:  J Antimicrob Chemother       Date:  2020-12-01       Impact factor: 5.790
  8 in total

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