Literature DB >> 36154144

Draft Genome Sequence of Pseudomonas mandelii Strain 29, Isolated from the Desert Truffle Terfezia claveryi.

Ángel Luigi Guarnizo1, Asunción Morte1, Alfonso Navarro-Ródenas1.   

Abstract

Here, we report the genome sequence of the mycorrhizal helper bacterium (MHB) Pseudomonas mandelii strain 29. This is the genome of an MHB associated with ascocarps of the desert truffle Terfezia claveryi. The genome is complete and consists of 6,302,122 bp and 5,812 predicted protein-coding sequences.

Entities:  

Year:  2022        PMID： 36154144      PMCID： PMC9584323          DOI： 10.1128/mra.00648-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  12 in total

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Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  What are the mechanisms and specificity of mycorrhization helper bacteria?

Authors:  Gary D Bending
Journal:  New Phytol       Date:  2007       Impact factor: 10.151

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Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

4.  Beneficial native bacteria improve survival and mycorrhization of desert truffle mycorrhizal plants in nursery conditions.

Authors:  Alfonso Navarro-Ródenas; Luis Miguel Berná; Cecilia Lozano-Carrillo; Alberto Andrino; Asunción Morte
Journal:  Mycorrhiza       Date:  2016-06-04       Impact factor: 3.387

5.  PATRIC: the VBI PathoSystems Resource Integration Center.

Authors:  E E Snyder; N Kampanya; J Lu; E K Nordberg; H R Karur; M Shukla; J Soneja; Y Tian; T Xue; H Yoo; F Zhang; C Dharmanolla; N V Dongre; J J Gillespie; J Hamelius; M Hance; K I Huntington; D Jukneliene; J Koziski; L Mackasmiel; S P Mane; V Nguyen; A Purkayastha; J Shallom; G Yu; Y Guo; J Gabbard; D Hix; A F Azad; S C Baker; S M Boyle; Y Khudyakov; X J Meng; C Rupprecht; J Vinje; O R Crasta; M J Czar; A Dickerman; J D Eckart; R Kenyon; R Will; J C Setubal; B W S Sobral
Journal:  Nucleic Acids Res       Date:  2006-11-16       Impact factor: 16.971

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Authors:  Bruce J Walker; Thomas Abeel; Terrance Shea; Margaret Priest; Amr Abouelliel; Sharadha Sakthikumar; Christina A Cuomo; Qiandong Zeng; Jennifer Wortman; Sarah K Young; Ashlee M Earl
Journal:  PLoS One       Date:  2014-11-19       Impact factor: 3.240

7.  Versatile genome assembly evaluation with QUAST-LG.

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Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

9.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

10.  Desert truffle mycorrhizosphere harbors organic acid releasing plant growth-promoting rhizobacteria, essentially during the truffle fruiting season.

Authors:  Francisco Arenas; Álvaro López-García; Luis Miguel Berná; Asunción Morte; Alfonso Navarro-Ródenas
Journal:  Mycorrhiza       Date:  2022-01-18       Impact factor: 3.387
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