Literature DB >> 36151489

Generation of Stable and Unmarked Conditional Mutants in Pseudomonas aeruginosa.

Alessandra Lo Sciuto1, Maria Concetta Spinnato1, Martina Pasqua2, Francesco Imperi3,4.   

Abstract

The functional and physiological characterization of bacterial genes required for growth and/or cell survival is limited by the inability to generate deletion mutants lacking the specific gene of interest. This limitation can be circumvented by generating conditional mutants in which the loss of the endogenous copy of the gene is compensated by the introduction of the wild-type allele under the control of an inducible promoter, which allows for tightly regulated expression of the gene of interest. Besides the confirmation and/or functional investigation of essential genes, conditional mutants can also be useful to investigate the effect of finely controlled expression of nonessential genes. In this chapter, we describe a method that can be used to generate stable and unmarked conditional mutants in Pseudomonas aeruginosa.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  AraC; Arabinose; Conditional mutants; Cystic fibrosis; Essential genes; Inducible expression; Pseudomonas

Mesh:

Substances:

Year:  2022        PMID: 36151489     DOI: 10.1007/978-1-0716-2581-1_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  23 in total

1.  Essential Bacillus subtilis genes.

Authors:  K Kobayashi; S D Ehrlich; A Albertini; G Amati; K K Andersen; M Arnaud; K Asai; S Ashikaga; S Aymerich; P Bessieres; F Boland; S C Brignell; S Bron; K Bunai; J Chapuis; L C Christiansen; A Danchin; M Débarbouille; E Dervyn; E Deuerling; K Devine; S K Devine; O Dreesen; J Errington; S Fillinger; S J Foster; Y Fujita; A Galizzi; R Gardan; C Eschevins; T Fukushima; K Haga; C R Harwood; M Hecker; D Hosoya; M F Hullo; H Kakeshita; D Karamata; Y Kasahara; F Kawamura; K Koga; P Koski; R Kuwana; D Imamura; M Ishimaru; S Ishikawa; I Ishio; D Le Coq; A Masson; C Mauël; R Meima; R P Mellado; A Moir; S Moriya; E Nagakawa; H Nanamiya; S Nakai; P Nygaard; M Ogura; T Ohanan; M O'Reilly; M O'Rourke; Z Pragai; H M Pooley; G Rapoport; J P Rawlins; L A Rivas; C Rivolta; A Sadaie; Y Sadaie; M Sarvas; T Sato; H H Saxild; E Scanlan; W Schumann; J F M L Seegers; J Sekiguchi; A Sekowska; S J Séror; M Simon; P Stragier; R Studer; H Takamatsu; T Tanaka; M Takeuchi; H B Thomaides; V Vagner; J M van Dijl; K Watabe; A Wipat; H Yamamoto; M Yamamoto; Y Yamamoto; K Yamane; K Yata; K Yoshida; H Yoshikawa; U Zuber; N Ogasawara
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-07       Impact factor: 11.205

Review 2.  Transposon sequencing: methods and expanding applications.

Authors:  Young Min Kwon; Steven C Ricke; Rabindra K Mandal
Journal:  Appl Microbiol Biotechnol       Date:  2016-01       Impact factor: 4.813

3.  Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis.

Authors:  E A Winzeler; D D Shoemaker; A Astromoff; H Liang; K Anderson; B Andre; R Bangham; R Benito; J D Boeke; H Bussey; A M Chu; C Connelly; K Davis; F Dietrich; S W Dow; M El Bakkoury; F Foury; S H Friend; E Gentalen; G Giaever; J H Hegemann; T Jones; M Laub; H Liao; N Liebundguth; D J Lockhart; A Lucau-Danila; M Lussier; N M'Rabet; P Menard; M Mittmann; C Pai; C Rebischung; J L Revuelta; L Riles; C J Roberts; P Ross-MacDonald; B Scherens; M Snyder; S Sookhai-Mahadeo; R K Storms; S Véronneau; M Voet; G Volckaert; T R Ward; R Wysocki; G S Yen; K Yu; K Zimmermann; P Philippsen; M Johnston; R W Davis
Journal:  Science       Date:  1999-08-06       Impact factor: 47.728

4.  Discovery, research, and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis.

Authors:  Evelina Tacconelli; Elena Carrara; Alessia Savoldi; Stephan Harbarth; Marc Mendelson; Dominique L Monnet; Céline Pulcini; Gunnar Kahlmeter; Jan Kluytmans; Yehuda Carmeli; Marc Ouellette; Kevin Outterson; Jean Patel; Marco Cavaleri; Edward M Cox; Chris R Houchens; M Lindsay Grayson; Paul Hansen; Nalini Singh; Ursula Theuretzbacher; Nicola Magrini
Journal:  Lancet Infect Dis       Date:  2017-12-21       Impact factor: 71.421

5.  Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection.

Authors:  Tomoya Baba; Takeshi Ara; Miki Hasegawa; Yuki Takai; Yoshiko Okumura; Miki Baba; Kirill A Datsenko; Masaru Tomita; Barry L Wanner; Hirotada Mori
Journal:  Mol Syst Biol       Date:  2006-02-21       Impact factor: 11.429

6.  In vitro and in vivo screening for novel essential cell-envelope proteins in Pseudomonas aeruginosa.

Authors:  Regina Fernández-Piñar; Alessandra Lo Sciuto; Alice Rossi; Serena Ranucci; Alessandra Bragonzi; Francesco Imperi
Journal:  Sci Rep       Date:  2015-12-01       Impact factor: 4.379

Review 7.  The design and analysis of transposon insertion sequencing experiments.

Authors:  Michael C Chao; Sören Abel; Brigid M Davis; Matthew K Waldor
Journal:  Nat Rev Microbiol       Date:  2016-02       Impact factor: 60.633

8.  A statistical framework for improving genomic annotations of prokaryotic essential genes.

Authors:  Jingyuan Deng; Shengchang Su; Xiaodong Lin; Daniel J Hassett; Long Jason Lu
Journal:  PLoS One       Date:  2013-03-08       Impact factor: 3.240

9.  DEG 15, an update of the Database of Essential Genes that includes built-in analysis tools.

Authors:  Hao Luo; Yan Lin; Tao Liu; Fei-Liao Lai; Chun-Ting Zhang; Feng Gao; Ren Zhang
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

Review 10.  A decade of advances in transposon-insertion sequencing.

Authors:  Amy K Cain; Lars Barquist; Andrew L Goodman; Ian T Paulsen; Julian Parkhill; Tim van Opijnen
Journal:  Nat Rev Genet       Date:  2020-06-12       Impact factor: 53.242

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