| Literature DB >> 36148155 |
Ricky Hu1, Ishita Chen2, Jacob Peoples3, Jean-Paul Salameh1, Mithat Gönen4, Paul B Romesser2, Amber L Simpson3,5, Marsha Reyngold2.
Abstract
Background and Purpose: Prognostic assessment of local therapies for colorectal liver metastases (CLM) is essential for guiding management in radiation oncology. Computed tomography (CT) contains liver texture information which may be predictive of metastatic environments. To investigate the feasibility of analyzing CT texture, we sought to build an automated model to predict progression-free survival using CT radiomics and artificial intelligence (AI). Materials andEntities:
Keywords: Artificial intelligence; Computer vision; Machine learning; Radiomics; Survival analysis
Year: 2022 PMID: 36148155 PMCID: PMC9485899 DOI: 10.1016/j.phro.2022.09.004
Source DB: PubMed Journal: Phys Imaging Radiat Oncol ISSN: 2405-6316
Fig. 1A visualization of the survival prediction system. The system contains two stages. The first is a training stage, where radiomic features are extracted from a set of computed tomography liver scans. Variance inflation factor and hazard ratio ranking is then used to filter out low information yielding features. The remaining features are used to train a random survival forest prediction model. Once the survival model has been built, it can be exported to a real-time prediction environment, where liver scans of new patients can be fed as input to the survival model to obtain a predicted survival for the new patient. In this way, most of the computation required is done beforehand to build the model and prediction can occur in real-time for new patients.
The categorization of clinical variables to imaging, treatment, and other (non-imaging and non-treatment) clinical variables. The goal of this categorization was to observe if different subsets of clinical data performed better at prediction progression in the absence of other subsets.
| Imaging Clinical Data | Number of lesions at radiotherapy |
| Treatment Clinical Data | Biologically effective dose (Gy) |
| Other Clinical Data | Primary tumor subsite |
A summary of accuracy results for each input combination to the model. The artificial intelligence model achieved good, nonrandom C-indices and feature selection decreased the variance of the cross-validation accuracies.
| Other Clinical Data | 0.64 [0.54, 0.75] | 0.18 [0.15, 0.22] |
| Imaging Clinical Data | 0.66 [0.61, 0.71] | 0.17 [0.14, 0.20] |
| Treatment Clinical Data | 0.69 [0.62, 0.77] | 0.17 [0.14, 0.20] |
| All Pre-treatment Clinical Data | 0.63 [0.55, 0.71] | 0.22 [0.19, 0.25] |
| All Clinical Data | 0.67 [0.58, 0.75] | 0.16 [0.15, 0.18] |
| Radiomics: Tumor Volume | 0.64 [0.52, 0.76] | 0.18 [0.17, 0.18] |
| Radiomics: Liver Parenchyma | 0.61 [0.53, 0.69] | 0.21 [0.19, 0.23] |
| Radiomics: Liver Parenchyma + Tumor | 0.66 [0.58, 0.74] | 0.20 [0.17, 0.22] |
| Treatment Clinical Data + Radiomics from Liver Parenchyma and Tumor | 0.66 [0.59, 0.73] | 0.19 [0.18, 0.21] |
| All Pre-treatment Clinical Data + Radiomics from Liver Parenchyma and Tumor | 0.66 [0.55, 0.77] | 0.21 [0.17, 0.25] |
| All Clinical Data and Radiomics from Liver Parenchyma + Tumor | 0.64 [0.60, 0.68] | 0.19 [0.16, 0.22] |
| Other Clinical Data | 0.66 [0.56, 0.76] | 0.19 [0.16, 0.22] |
| Imaging Clinical Data | 0.61 [0.56, 0.66] | 0.17 [0.14, 0.19] |
| Treatment Clinical Data | 0.72 [0.64, 0.79] | 0.18 [0.15, 0.21] |
| All Pre-treatment Clinical Data | 0.65 [0.58, 0.72] | 0.21 [0.18, 0.24] |
| All Clinical Data | 0.62 [0.56, 0.69] | 0.19 [0.16, 0.22] |
| Radiomics: Tumor Volume | 0.58 [0.51, 0.84] | 0.19 [0.16, 0.24] |
| Radiomics: Liver Parenchyma | 0.66 [0.60, 0.72] | 0.20 [0.18, 0.22] |
| Radiomics: Liver Parenchyma + Tumor | 0.68 [0.62, 0.74] | 0.20 [0.16, 0.25] |
| Treatment Clinical Data + Radiomics from Liver Parenchyma and Tumor | 0.73 [0.64, 0.82] | 0.18 [0.15, 0.20] |
| All Pre-treatment Clinical Data + Radiomics from Liver Parenchyma and Tumor | 0.66 [0.57, 0.75] | 0.20 [0.17, 0.23] |
| All Clinical Data and Radiomics from Liver Parenchyma + Tumor | 0.69 [0.65, 0.74] | 0.23 [0.21, 0.26] |
A summary of accuracy results for each input combination to the model which utilized radiomic features as input to a Cox proportional hazards model. All models cross the 0.50 concordance index threshold, indicating that random prediction cannot be ruled out. However, the upper bound for most models overlaps with the random survival forest models, indicating high variance in Cox modeling.
| Other Clinical Data | 0.53 [0.50, 0.56] | 0.20 [0.18, 0.22] |
| Imaging Clinical Data | 0.56 [0.45, 0.67] | 0.25 [0.22, 0.28] |
| Treatment Clinical Data | 0.50 [0.48, 0.52] | 0.24 [0.20, 0.28] |
| All Pre-treatment Clinical Data | 0.54 [0.48, 0.60] | 0.19 [0.15, 0.23] |
| All Clinical Data | 0.57 [0.48, 0.66] | 0.21 [0.16, 0.26] |
| Radiomics: Tumor Volume | 0.47 [0.42, 0.52] | 0.22 [0.17, 0.27] |
| Radiomics: Liver Parenchyma | 0.49 [0.42, 0.56] | 0.24 [0.22, 0.26] |
| Radiomics: Liver Parenchyma + Tumor | 0.43 [0.40, 0.46] | 0.25 [0.21, 0.29] |
| Treatment Clinical Data + Radiomics from Liver Parenchyma and Tumor | 0.53 [0.45, 0.61] | 0.19 [0.15, 0.23] |
| All Pre-treatment Clinical Data + Radiomics from Liver Parenchyma and Tumor | 0.55 [0.49, 0.61] | 0.20 [0.17, 0.23] |
| All Clinical Data and Radiomics from Liver Parenchyma + Tumor | 0.58 [0.47, 0.67] | 0.22 [0.19, 0.25] |
Fig. 2Comparison of the predicted local progression-free survival (red), defined as freedom from local progression, from the random survival forest compared to the actual survival (red) from a Kaplan-Meier model of the outcome data. Comparisons include the best k-fold (left) and worst k-fold (right) during cross-validation from using radiomics using liver and tumor volumes and treatment data (top), radiomics data only (middle), or treatment data only (bottom). All models a higher C-index greater than 0.50 and the usage of radiomic features enhances the accuracy of the model compared to with treatment data alone. (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)
The feature importances for the random survival forest model utilizing treatment data only, radiomics data only, or the combination of both. Maximum dose was observed to be the most predictive feature, significantly with more information gain than any other treatment feature. Gray tone difference matrix computations were the most predictive when only using radiomics data. Both gray tone difference matrices and maximum dose features resulted in high predictive value in the combined model. However, the importance of maximum dose was decreased compared to when using only treatment data, indicating that the model is still able to predict survival with the remaining radiomic features.
| Maximum Dose | 10.84 [6.35, 15.34] |
| Carcinoembryonic Antigen at Radiotherapy | 2.69 [−0.43, 5.81] |
| Lines of Chemotherapy | 2.53 [1.16, 3.9] |
| Pump Before Radiotherapy | −0.81 [−1.57, −0.05] |
| Neighborhood Gray Tone Difference Matrix Strength | 3.74 [2.25, 5.22] |
| Neighborhood Gray Tone Difference Matrix Busyness | 3.32 [2.5, 4.15] |
| Kurtosis | 1.97 [1.58, 2.37] |
| Maximum 2D Diameter Slice | 1.45 [0.20, 2.69] |
| Gray Level Size Zone Matrix Low Gray Level Emphasis | 0.33 [−0.75, 1.42] |
| Neighborhood Gray Tone Difference Matrix Contrast | 0.02 [−0.78, 0.82] |
| Skewness | −0.25 [−0.81, 0.31] |
| Gray Level Co-occurrence Matrix Cluster Shade | −0.88 [−2.78, 1.01] |
| Maximum Dose | 3.83 [1.05, 6.62] |
| Neighborhood Gray Tone Difference Matrix Strength | 1.90 [0.93, 2.86] |
| Lines of Chemotherapy | 1.36 [0.38, 2.35] |
| Gray Level Size Zone Matrix Low Gray Level Emphasis | 1.01 [−0.37, 2.39] |
| KRAS Mutation | 0.65 [0.10, 1.19] |
| Carcinoembryonic Antigen at Radiotherapy | 0.48 [−1.11, 2.08] |
| Gray Level Size Zone Matrix Nonuniformity | 0.48 [−0.32, 1.27] |
| Gray Level Co-occurrence Matrix Cluster Shade | 0.17 [−0.98, 1.32] |
| Pump Before Radiotherapy | −0.08 [−1.21, 1.04] |
| Skewness | −0.29 [−0.73, 0.15] |