| Literature DB >> 36140675 |
Yahui Chen1,2, Shiyang Zhang2, Shanfeng Du1, Xiaomian Zhang3, Guangyu Wang2, Jiefan Huang2, Jiang Jiang1.
Abstract
Saline soil is a worldwide distributed resource that seriously harms plants' growth and development. NaCl is the most widely distributed salt in saline soil. As a typical representative of halophytes, Tamarix ramosissima Lcdcb (T. ramosissima) is commonly grown in salinized soil, and halophytes have different abilities to retain more K+ under salt stress conditions. Halophytes can adapt to different salt environments by improving the scavenging activity of reactive oxygen species (ROS) by absorbing and transporting potassium (K+). In this study, electron microscope observation, hydrogen peroxide (H2O2) and malondialdehyde (MDA) contents determination, primary antioxidant enzyme activity determination and transcriptome sequencing analysis were carried out on the leaves of T. ramosissima under NaCl stress at 0 h, 48 h and 168 h. The results showed that H2O2 and MDA contents increased in the 200 mM NaCl + 10 mM KCl and 200 mM NaCl groups, but the content increased the most in the 200 mM NaCl group at 168 h. In addition, the leaves of T. ramosissima in the 200 mM NaCl + 10 mM KCl group had the most salt secretion, and its superoxide dismutase (SOD), peroxidase (POD) and catalase (CAT) activities were all higher than those of the 200 mM NaCl group and significantly higher than those of the control group. According to the results of transcriptome sequencing, it was found that the expression of 39 genes related to antioxidant enzyme activity changed significantly at the transcriptional level. Among them, 15 genes related to antioxidant enzyme activities were upregulated, and 24 genes related to antioxidant enzyme activities were downregulated in the leaves of T. ramosissima when exogenous potassium (K+) was applied under NaCl stress for 48 h; when exogenous potassium (K+) was used for 168 h under NaCl stress, 21 antioxidant enzyme activity-related genes were upregulated, and 18 antioxidant enzyme activity-related genes were downregulated in T. ramosissima leaves. Based on the changes of expression levels at different treatment times, 10 key candidates differentially expressed genes (DEGs) (Unigene0050462, Unigene0014843, Unigene0046159, Unigene0046160, Unigene0008032, Unigene0048033, Unigene0004890, Unigene0015109, Unigene0020552 and Unigene0048538) for antioxidant enzyme activities were further screened. They played an important role in applying exogenous potassium (K+) for 48 h and 168 h to the leaves of T. ramosissima in response to NaCl stress. Their expression levels were dominated by upregulation, which enhanced the activity of antioxidant enzymes, and helped T. ramosissima mitigate NaCl poison and resist NaCl stress. Particularly, Unigene0048538 in glutathione S-transferase (GST) activity had the largest log2 fold-change in the comparison groups of 200 mM NaCl-48 h vs. 200 mM NaCl + 10 mM KCl-48 h and 200 mM NaCl-168 h vs. 200 mM NaCl + 10 mM KCl-168 h. Its expression level was upregulated and played an important role in NaCl toxicity. At the same time, the results of the phylogenetic tree analysis showed that Unigene0048538 had the closest genetic distance to Prunus persica in the evolutionary relationship. In summary, with the increase of exogenous potassium (K+) application time under NaCl stress, T. ramosissima can resist high NaCl stress by enhancing antioxidant enzymes' activity and maintaining the growth of T. ramosissima. Still, it is not enough to completely eliminate NaCl poison. This study provides a theoretical basis for the molecular mechanism of salt tolerance and K+ mitigation of NaCl poison by the representative halophyte T. ramosissima in response to NaCl stress.Entities:
Keywords: NaCl poison; NaCl stress; Tamarix ramosissima; exogenous potassium (K+); mitigate
Mesh:
Substances:
Year: 2022 PMID: 36140675 PMCID: PMC9498862 DOI: 10.3390/genes13091507
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.141
Figure 1Changes in salt secretion in leaves of T. ramosissima under different treatments. Changes of salt secretion in leaves of T. ramosissima at 0 h, 48 h and 168 h under different treatments. Note: (a) represents the control group, (b) represents 200 mM NaCl, and (c) represents 200 mM NaCl + 10 mM KCl. The red circled parts indicate the salt secretion distribution of T. ramosissima leaves under different treatments. (a,b) refer to the data of Chen et al. (https://doi.org/10.1371/journal.pone.0265653).
Figure 2Changes of H2O2 and MDA content in leaves of T. ramosissima under different treatments. Changes of H2O2 and MDA content in the leaves of T. ramosissima at 48 h and 168 h in the control group and different treatment groups. Note: different letters indicate the significance of differences among treatments at the same time, p < 0.05.
Figure 3Changes of SOD, POD and CAT activities in leaves of T. ramosissima under different treatments. Changes of SOD, POD and CAT activities in leaves of T. ramosissima at 48 h and 168 h under different treatments. Note: different letters indicate the significance of differences among treatments at the same time, p < 0.05. There were 3 biological replicates applied for all determination.
Annotation of DEGs in the top 20 KEGG pathways of T. ramosissima leaves under NaCl stress with exogenous potassium (K+).
| ID | Gene Numbers | Class | KEGG Pathway | Up | Down | |
|---|---|---|---|---|---|---|
|
| ||||||
| Phenylpropanoid biosynthesis | 78 | Metabolism | ko00940 | 0.000000 | 30 | 48 |
| Plant hormone signal transduction | 84 | Environmental Information Processing | ko04075 | 0.000000 0.000000 | 27 | 57 |
| Flavonoid biosynthesis | 25 | Metabolism | ko00941 | 0.000000 | 6 | 19 |
| Stilbenoid, diarylheptanoid and gingerol biosynthesis | 16 | Metabolism | ko00945 | 0.000000 | 5 | 11 |
| Fatty acid elongation | 30 | Metabolism | ko00062 | 0.000000 | 12 | 18 |
| Plant–pathogen interaction | 98 | Organismal Systems | ko04626 | 0.000000 | 60 | 38 |
| Metabolic pathways | 973 | Metabolism | ko01100 | 0.000000 | 380 | 593 |
| Cutin, suberine and wax biosynthesis | 15 | Metabolism | ko00073 | 0.000000 | 3 | 12 |
| Biosynthesis of secondary metabolites | 519 | Metabolism | ko01110 | 0.000193 | 212 | 307 |
| Anthocyanin biosynthesis | 4 | Metabolism | ko00942 | 0.001236 | 0 | 4 |
| MAPK signaling pathway—plant | 59 | Environmental Information Processing | ko04016 | 0.001374 | 31 | 28 |
| Glycerolipid metabolism | 40 | Metabolism | ko00561 | 0.002193 | 16 | 24 |
| Brassinosteroid biosynthesis | 6 | Metabolism | ko00905 | 0.003482 | 0 | 6 |
| Circadian rhythm-plant | 17 | Organismal Systems | ko04712 | 0.007701 | 6 | 11 |
| Base excision repair | 17 | Genetic Information Processing | ko03410 | 0.008901 | 3 | 14 |
| Starch and sucrose metabolism | 68 | Metabolism | ko00500 | 0.010989 | 25 | 43 |
| Glycosaminoglycan degradation | 7 | Metabolism | ko00531 | 0.013165 | 1 | 6 |
| Diterpenoid biosynthesis | 7 | Metabolism | ko00904 | 0.013165 | 3 | 4 |
| Zeatin biosynthesis | 7 | Metabolism | ko00908 | 0.013165 | 4 | 3 |
| Linoleic acid metabolism | 8 | Metabolism | ko00591 | 0.013753 | 4 | 4 |
|
| ||||||
| Ribosome | 438 | Genetic Information Processing | ko03010 | 0.000000 | 352 | 86 |
| Oxidative phosphorylation | 156 | Metabolism | ko00190 | 0.000000 | 107 | 49 |
| Fatty acid elongation | 21 | Metabolism | ko00062 | 0.000000 | 17 | 4 |
| Phenylpropanoid biosynthesis | 36 | Metabolism | ko00940 | 0.000000 | 24 | 12 |
| Stilbenoid, diarylheptanoid and gingerol biosynthesis | 8 | Metabolism | ko00945 | 0.002351 | 5 | 3 |
| Flavonoid biosynthesis | 10 | Metabolism | ko00941 | 0.002846 | 5 | 5 |
| Glycolysis/Gluconeogenesis | 73 | Metabolism | ko00010 | 0.008388 | 51 | 22 |
| Brassinosteroid biosynthesis | 4 | Metabolism | ko00905 | 0.026406 | 4 | 0 |
| Glutathione metabolism | 37 | Metabolism | ko00480 | 0.033437 | 28 | 9 |
| Limonene and pinene degradation | 7 | Metabolism | ko00903 | 0.050223 | 5 | 2 |
| Cutin, suberine and wax biosynthesis | 6 | Metabolism | ko00073 | 0.053552 | 3 | 3 |
| Biosynthesis of unsaturated fatty acids | 20 | Metabolism | ko01040 | 0.068133 | 18 | 2 |
| Diterpenoid biosynthesis | 4 | Metabolism | ko00904 | 0.123174 | 1 | 3 |
| Citrate cycle (TCA cycle) | 52 | Metabolism | ko00020 | 0.149175 | 33 | 19 |
| Ascorbate and aldarate metabolism | 18 | Metabolism | ko00053 | 0.172390 | 11 | 7 |
| Fatty acid metabolism | 40 | Metabolism | ko01212 | 0.177221 | 35 | 5 |
| Sesquiterpenoid and triterpenoid biosynthesis | 5 | Metabolism | ko00909 | 0.185229 | 2 | 3 |
| Plant hormone signal transduction | 31 | Environmental Information Processing | ko04075 | 0.189067 | 21 | 10 |
| Arachidonic acid metabolism | 7 | Metabolism | ko00590 | 0.215454 | 5 | 2 |
| Flavone and flavonol biosynthesis | Metabolism | ko00944 | 0.252624 | 0 | 1 | |
Figure 4Top 20 KEGG pathways analysis in the transcriptome. First and outer circle: the top 20 KEGG pathways are enriched, outside the circle is the scale of the number of genes. Different colors represent different ontologies. Second circle: the number of the KEGG pathway in the background gene and the Q value. Moreover, the darker the color, the smaller the Q value. The longer the bars, the more genes it contains. The dark color represents the proportion of upregulated genes, and the light color represents the proportion of downregulated genes. The specific value is displayed below. Fourth and inner circle: the ratio of each KEGG pathway rich factor value (the number of differential genes in this KEGG pathway divided by all numbers); background grid lines, each grid represents 0.1.
Antioxidant DEGs annotated to the KEGG pathways.
| Pathway | Gene ID | Description | Log2 Fold-Change | |
|---|---|---|---|---|
| 200 mM NaCl-48 h vs. 200 mM NaCl + 10 mM KCl-48 h | 200 mM NaCl-168 h vs. 200 mM NaCl + 10 mM KCl-168 h | |||
| SOD | ||||
| ko04146 |
| SOD4 protein, partial | 0.69 | −0.06 |
|
| Superoxide dismutase [Mn] | −7.82 | −9.54 | |
|
| Superoxide dismutase | 0.73 | 0.71 | |
|
| Superoxide dismutase | 0.25 | −0.25 | |
| POD | ||||
| ko01100; ko01110; ko00940 |
| Peroxidase 20 | −1.66 | −0.10 |
|
| Peroxidase | −1.87 | 0.99 | |
|
| Peroxidase | −0.65 | −0.09 | |
|
| Peroxidase | 3.20 | 1.25 | |
|
| Peroxidase 17 | −2.04 | 0.03 | |
|
| Peroxidase 5 | 4.50 | −1.35 | |
|
| Peroxidase 52 | −1.70 | −0.59 | |
|
| Peroxidase 31 | 1.10 | −0.42 | |
| CAT | ||||
| ko01100; ko01110; ko01200; ko00630; ko04146; ko04016; ko00380 |
| Catalase isozyme 1 | 0.77 | 0.25 |
|
| Catalase, partial | 0.93 | 0.40 | |
|
| Leaf catalase | −0.75 | 0.38 | |
|
| Catalase isozyme 1 | −5.74 | −12.41 | |
| APX | ||||
| ko01100; ko00480 |
| L-ascorbate peroxidase 3 | 0.01 | 0.21 |
|
| L-ascorbate peroxidase 3 | −0.34 | −0.43 | |
|
| Peroxidase domain-containing | −1.50 | 0.47 | |
|
| Cytosolic ascorbate peroxidase | 0.62 | 0.13 | |
|
| Thylakoid ascorbate Peroxidase precursor, partial | −0.35 | −0.21 | |
| GPX | ||||
| ko01100; ko00480; ko00590 |
| Glutathione peroxidase | −1.32 | 0.34 |
| GST | ||||
| ko01100; ko00480 |
| Glutathione S-transferase | −1.61 | 5.20 |
|
| Glutathione S-transferase T1-like | 1.03 | 0.58 | |
|
| Glutathione S-transferase U17-like | −1.13 | −1.16 | |
|
| Glutathione S-transferase Mu 1-like | −4.15 | 0.13 | |
|
| Glutathione S-transferase U8-like | 1.48 | 0.44 | |
|
| Glutathione S-transferase | 0.48 | 0.12 | |
|
| Microsomal glutathione S-transferase 3-like | −0.24 | −0.04 | |
|
| Glutathione S-transferase U10-like | 3.56 | 3.19 | |
|
| Glutathione S-transferase | −0.04 | −0.44 | |
|
| Glutathione S-transferase L3 | −0.47 | 0.33 | |
|
| Glutathione-S-transferase | 0.72 | −0.06 | |
|
| Glutathione S-transferase L3-like | −1.55 | 0.48 | |
|
| Glutathione S-transferase U10-like | −1.08 | −0.63 | |
|
| Glutathione S-transferase F11-like | −3.80 | 0.49 | |
|
| Glutathione S-transferase U9 | −0.83 | 5.91 | |
| GR | ||||
| ko01100; ko00480 |
| Glutathione reductase | −0.50 | −0.10 |
|
| Glutathione reductase-like | −8.98 | −10.52 | |
Figure 5The number of gene expression changes of antioxidant enzymes in leaves of T. ramosissima under NaCl stress with exogenous potassium (K+) application. Changes in the expression levels of DEGs with 7 types of antioxidant enzymes in the leaves of T. ramosissima under NaCl stress for 48 h and 168 h. Note: NaCl means 200 mM NaCl; NaCl + KCl means 200 mM NaCl + 10 mM KCl. GR: glutathione reductase; GST: glutathione S-transferases; GPX: glutathione peroxidase; APX: ascorbate peroxidase; CAT: catalases; POD: peroxidase; SOD: superoxide dismutase.
Information sheet for 21 species.
| Family | Species | Description | Gene | Protein ID | CDS (bp) | ORF Length (aa) |
|---|---|---|---|---|---|---|
| Amaranthaceae |
| Glutathione S-transferase U10-like |
| XP_021860277.1 | 693 | 230 |
| Euphorbiaceae |
| Glutathione S-transferase U9 |
| XP_002511574.1 | 696 | 231 |
| Rhamnaceae |
| Glutathione S-transferase U9-like |
| XP_048330345.1 | 693 | 230 |
| Malvaceae |
| Glutathione S-transferase U9-like |
| XP_021287145.1 | 693 | 230 |
| Juglandaceae |
| Glutathione S-transferase U9 |
| XP_042947240.1 | 705 | 234 |
| Amaranthaceae |
| Glutathione S-transferase U10-like |
| XP_021761389.1 | 693 | 230 |
| Malvaceae |
| Glutathione S-transferase tau 9 |
| EOY21827.1 | 693 | 230 |
| Rosaceae | Glutathione S-transferase U9 |
| XP_018505776.2 | 693 | 230 | |
| Juglandaceae |
| Glutathione S-transferase U9-like |
| XP_018848691.2 | 690 | 229 |
| Rosaceae |
| Glutathione S-transferase U10-like |
| XP_021820694.1 | 696 | 231 |
| Fagaceae |
| Glutathione S-transferase U9-like |
| XP_023928011.1 | 699 | 232 |
| Rosaceae |
| Glutathione S-transferase U10 |
| XP_024173178.1 | 702 | 233 |
| Fabaceae |
| Glutathione S-transferase U9-like |
| XP_028763447.1 | 699 | 232 |
| Rosaceae |
| Glutathione S-transferase U9-like |
| XP_034217038.1 | 693 | 230 |
| Fagaceae |
| Glutathione S-transferase U9 |
| XP_030937552.1 | 699 | 232 |
| Rutaceae |
| Glutathione S-transferase U9-like |
| XP_015385201.1 | 693 | 230 |
| Rosaceae |
| Glutathione S-transferase U10 |
| XP_007208953.1 | 699 | 232 |
| Rubiaceae |
| Glutathione S-transferase U9-like |
| XP_027124538.1 | 705 | 234 |
| Myricaceae |
| Glutathione S-transferase U9 |
| KAB1199317.1 | 696 | 231 |
| Cannabaceae |
| Glutathione S-transferase U9 |
| XP_030492967.1 | 693 | 230 |
| Vitaceae |
| glutathione S-transferase U9-like |
| XP_034673741.1 | 696 | 231 |
Figure 6Phylogenetic tree analysis of T. ramosissima GST and other species GST. Phylogenetic tree analysis of Unigene0048538 protein amino acid sequence and protein amino acid sequence of other 21 species of T. ramosissima.