| Literature DB >> 36136641 |
Innocent Chingombe1,2, Tafadzwa Dzinamarira2,3, Diego Cuadros4, Munyaradzi Paul Mapingure2, Elliot Mbunge5, Simbarashe Chaputsira2, Roda Madziva6, Panashe Chiurunge1, Chesterfield Samba7, Helena Herrera8, Grant Murewanhema9, Owen Mugurungi10, Godfrey Musuka2.
Abstract
HIV and AIDS continue to be major public health concerns globally. Despite significant progress in addressing their impact on the general population and achieving epidemic control, there is a need to improve HIV testing, particularly among men who have sex with men (MSM). This study applied deep and machine learning algorithms such as recurrent neural networks (RNNs), the bagging classifier, gradient boosting classifier, support vector machines, and Naïve Bayes classifier to predict HIV status among MSM using the dataset from the Zimbabwe Ministry of Health and Child Care. RNNs performed better than the bagging classifier, gradient boosting classifier, support vector machines, and Gaussian Naïve Bayes classifier in predicting HIV status. RNNs recorded a high prediction accuracy of 0.98 as compared to the Gaussian Naïve Bayes classifier (0.84), bagging classifier (0.91), support vector machine (0.91), and gradient boosting classifier (0.91). In addition, RNNs achieved a high precision of 0.98 for predicting both HIV-positive and -negative cases, a recall of 1.00 for HIV-negative cases and 0.94 for HIV-positive cases, and an F1-score of 0.99 for HIV-negative cases and 0.96 for positive cases. HIV status prediction models can significantly improve early HIV screening and assist healthcare professionals in effectively providing healthcare services to the MSM community. The results show that integrating HIV status prediction models into clinical software systems can complement indicator condition-guided HIV testing strategies and identify individuals that may require healthcare services, particularly for hard-to-reach vulnerable populations like MSM. Future studies are necessary to optimize machine learning models further to integrate them into primary care. The significance of this manuscript is that it presents results from a study population where very little information is available in Zimbabwe due to the criminalization of MSM activities in the country. For this reason, MSM tends to be a hidden sector of the population, frequently harassed and arrested. In almost all communities in Zimbabwe, MSM issues have remained taboo, and stigma exists in all sectors of society.Entities:
Keywords: HIV/AIDS; MSM; deep learning; machine learning; prediction models; status
Year: 2022 PMID: 36136641 PMCID: PMC9506312 DOI: 10.3390/tropicalmed7090231
Source DB: PubMed Journal: Trop Med Infect Dis ISSN: 2414-6366
Description of features.
| Feature Name | Feature Description |
|---|---|
| PPRKNOW | Knowledge of Pre-exposure prophylaxis as (PrEP) |
| PPEKNOW | Knowledge of Post-exposure prophylaxis as (PEP) |
| HKHVPRSK | Self-perceived chances of becoming HIV infected in the next 12 months |
| DEAGENUM | Age in completed years |
| HIVNOTES | HIV Services where one was ever referred to |
| DEMARSTA | Marital status |
| INLRNWHT_9 | Desire to learn more HIV treatment |
| SYPHTRE | Syphilis test result |
| INLRNWHT | HIV-related topics to learn more about |
| PPRTAKE | Ever taken PrEP |
| STCIRCM | Circumcision status |
| DEOUTWHO_2 | Disclosed sexual identity to family members |
| DEOUTWHO_6 | Disclosed sexual identity to a Health care provider |
| LUFREE | Ever been given “packets” of lubricant for free? For example, through an outreach service, drop-in centre, or health clinic, in the last six months |
| INLRNWHT_2 | Desire to learn more about how to prevent HIV |
| LUTYPE_c | Use of water-based lubricant (Durex, etc.) during anal sex in the last 6 months |
| RCFEMNA | Type of sex (anal, oral, both), during last sex with main female partner |
| INLRNWHT_1 | Desire to learn more about HIV prevention |
| DEATTRA | Sex/gender most sexually attracted to |
| LUNEVUSE | The main reason for not using a lubricant during anal sex in the past six months |
| DELIVESX | Currently living with a sexual partner or not |
| DEINCOME | Last monthly income |
| COANO_a | Condom use during anal sex when drunk |
| RCMAMNFQ | Frequency of condom use with the male partner one has sex with the most, in the last 6 months |
| DEREADWR | Ability to read and write |
| COLIKELY | Whether one is likely to use the condom when a man inserts his penis into his anus (butt) or when he is the one inserting a penis into someone’s anus or equally likely for both cases |
| LU12LUTG | Frequency of use of lubricants during anal sex with a man or transgender woman, in the last six months |
Figure 1Correlation matrix of the selected features.
Figure 2HIV status prediction models.
Figure 3RNN Architecture.
Performance of HIV status prediction models.
| Prediction Model | Precision | Recall | F1-Score | Accuracy | AUC | |||
|---|---|---|---|---|---|---|---|---|
| Negative | Positive | Negative | Positive | Negative | Positive | |||
| RNN | 0.98 | 0.98 | 1.00 | 0.94 | 0.99 | 0.96 | 0.98 | 0.94 |
| Gaussian Naïve Bayes | 0.89 | 0.65 | 0.88 | 0.68 | 0.88 | 0.66 | 0.83 | 0.87 |
| Bagging Classifier | 0.89 | 0.90 | 0.96 | 0.62 | 0.92 | 0.73 | 0.90 | 0.85 |
| SVM | 0.89 | 0.96 | 0.93 | 0.62 | 0.91 | 0.75 | 0.91 | 0.81 |
| Gradient Boosting Classifier | 0.91 | 0.89 | 0.97 | 0.65 | 0.94 | 0.75 | 0.91 | 0.89 |
Figure 4Naïve Bayes ROC algorithm ROC Curve.
Figure 5Support Vector Machine’s ROC Curve.
Figure 6Bagging classifier ROC Curve.
Figure 7Gradient boosting algorithm ROC curve.
Figure 8RNN’s training and testing loss.