Literature DB >> 36136135

Desulfoluna limicola sp. nov., a sulfate-reducing bacterium isolated from sediment of a brackish lake.

Miho Watanabe1, Ayaka Takahashi2,3, Hisaya Kojima4, Manabu Fukui2.   

Abstract

A novel sulfate-reducing bacterium, strain ASN36T, was isolated from sediment of a brackish lake in Japan. Cells of strain ASN36T were not motile and rod-shaped, with length of 2.0-4.9 μm and width of 0.6-0.9 μm. Growth was observed at 5-35 °C with an optimum growth temperature of 25-30 °C. The pH range for growth was 6.6-8.8 with an optimum pH of 7.3. Major fatty acids were C16:1 ω7c and C16:0. Under sulfate-reducing conditions, strain ASN36T utilized lactate, malate, pyruvate, butyrate, ethanol, butanol, glycerol, yeast extract and H2/CO2 as growth substrate. Fermentative growth occurred on malate and pyruvate. The novel isolate used sulfate, sulfite and thiosulfate as electron acceptors. The genome of strain ASN36T is composed of a chromosome with length of 6.3 Mbp and G + C content of 55.1 mol%. Analyses of the 16S rRNA gene indicated that strain ASN36T is related to Desulfoluna species. Overall genome relatedness indices indicated that strain ASN36T does not belong to any existing species. In contrast to the closest relatives, strain ASN36T lacks genes for reductive dehalogenase required for organohalide respiration and does not use halogenated aromatics as electron acceptors. On the basis of its genomic and phenotypic properties, strain ASN36T (= DSM 111985 T = JCM 39257 T) is proposed as the type strain of a new species, Desulfoluna limicola sp. nov.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Brackish lake; Desulfoluna; Sulfate-reducing bacteria

Year:  2022        PMID: 36136135     DOI: 10.1007/s00203-022-03259-0

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.667


  10 in total

1.  Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age.

Authors:  Jan P Meier-Kolthoff; Hans-Peter Klenk; Markus Göker
Journal:  Int J Syst Evol Microbiol       Date:  2014-02       Impact factor: 2.747

2.  Pseudodesulfovibrio sediminis sp. nov., a mesophilic and neutrophilic sulfate-reducing bacterium isolated from sediment of a brackish lake.

Authors:  Ayaka Takahashi; Hisaya Kojima; Miho Watanabe; Manabu Fukui
Journal:  Arch Microbiol       Date:  2022-05-09       Impact factor: 2.552

3.  Reductive dehalogenation of brominated phenolic compounds by microorganisms associated with the marine sponge Aplysina aerophoba.

Authors:  Young-Beom Ahn; Sung-Keun Rhee; Donna E Fennell; Lee J Kerkhof; Ute Hentschel; Max M Häggblom
Journal:  Appl Environ Microbiol       Date:  2003-07       Impact factor: 4.792

4.  Desulfoluna spongiiphila sp. nov., a dehalogenating bacterium in the Desulfobacteraceae from the marine sponge Aplysina aerophoba.

Authors:  Young-Beom Ahn; Lee J Kerkhof; Max M Häggblom
Journal:  Int J Syst Evol Microbiol       Date:  2009-07-15       Impact factor: 2.747

5.  Transcriptomic and Proteomic Responses of the Organohalide-Respiring Bacterium Desulfoluna spongiiphila to Growth with 2,6-Dibromophenol as the Electron Acceptor.

Authors:  Jie Liu; Lorenz Adrian; Max M Häggblom
Journal:  Appl Environ Microbiol       Date:  2020-02-18       Impact factor: 4.792

6.  Desulfoluna butyratoxydans gen. nov., sp. nov., a novel Gram-negative, butyrate-oxidizing, sulfate-reducing bacterium isolated from an estuarine sediment in Japan.

Authors:  Daisuke Suzuki; Atsuko Ueki; Aya Amaishi; Katsuji Ueki
Journal:  Int J Syst Evol Microbiol       Date:  2008-04       Impact factor: 2.747

7.  MEGA11: Molecular Evolutionary Genetics Analysis Version 11.

Authors:  Koichiro Tamura; Glen Stecher; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2021-06-25       Impact factor: 16.240

8.  Genome sequence-based species delimitation with confidence intervals and improved distance functions.

Authors:  Jan P Meier-Kolthoff; Alexander F Auch; Hans-Peter Klenk; Markus Göker
Journal:  BMC Bioinformatics       Date:  2013-02-21       Impact factor: 3.169

9.  DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.

Authors:  Yasuhiro Tanizawa; Takatomo Fujisawa; Yasukazu Nakamura
Journal:  Bioinformatics       Date:  2018-03-15       Impact factor: 6.937

10.  Organohalide-respiring Desulfoluna species isolated from marine environments.

Authors:  Peng Peng; Tobias Goris; Yue Lu; Bart Nijsse; Anna Burrichter; David Schleheck; Jasper J Koehorst; Jie Liu; Detmer Sipkema; Jaap S Sinninghe Damste; Alfons J M Stams; Max M Häggblom; Hauke Smidt; Siavash Atashgahi
Journal:  ISME J       Date:  2020-01-02       Impact factor: 10.302

  10 in total

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