Literature DB >> 36135389

Draft Genome Sequences of Pseudomonas sp. Strains MWU13-2100 and MWU13-2105 Isolated from Wild Cranberry Bog Soil in the Cape Cod National Seashore.

Brian Mayer1, Scott Soby1,2.   

Abstract

Pseudomonas sp. strains MWU13-2100 and MWU13-2105 were isolated from a wild cranberry bog with Pipestone loamy coarse sand soil in Truro, Massachusetts, and taxonomically assigned based on whole-genome sequences. The draft genomes are most closely related to P. batumici (41.4% and 41.8% dDDHd4), but with only 50.8 dDDHd4 to each other.

Entities:  

Year:  2022        PMID： 36135389      PMCID： PMC9584206          DOI： 10.1128/mra.00557-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  13 in total

Review 1.  Plant-growth-promoting rhizobacteria.

Authors:  Ben Lugtenberg; Faina Kamilova
Journal:  Annu Rev Microbiol       Date:  2009       Impact factor: 15.500

2.  QUAST: quality assessment tool for genome assemblies.

Authors:  Alexey Gurevich; Vladislav Saveliev; Nikolay Vyahhi; Glenn Tesler
Journal:  Bioinformatics       Date:  2013-02-19       Impact factor: 6.937

3.  Volatile Organic Compounds Produced by Pseudomonas chlororaphis subsp. aureofaciens SPS-41 as Biological Fumigants To Control Ceratocystis fimbriata in Postharvest Sweet Potatoes.

Authors:  Yu Zhang; Tengjie Li; Yuanfang Liu; Xiaoyan Li; Chunmei Zhang; Zhaozhong Feng; Xue Peng; Zongyun Li; Sheng Qin; Ke Xing
Journal:  J Agric Food Chem       Date:  2019-03-22       Impact factor: 5.279

4.  Network analysis of ten thousand genomes shed light on Pseudomonas diversity and classification.

Authors:  Hemanoel Passarelli-Araujo; Glória Regina Franco; Thiago M Venancio
Journal:  Microbiol Res       Date:  2021-11-15       Impact factor: 5.415

5.  Analysis of the genome sequence of plant beneficial strain Pseudomonas sp. RU47.

Authors:  Nemanja Kuzmanović; Namis Eltlbany; Guochun Ding; Mohamed Baklawa; Lin Min; Lu Wei; Kornelia Smalla
Journal:  J Biotechnol       Date:  2018-07-18       Impact factor: 3.307

6.  RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.

Authors:  Thomas Brettin; James J Davis; Terry Disz; Robert A Edwards; Svetlana Gerdes; Gary J Olsen; Robert Olson; Ross Overbeek; Bruce Parrello; Gordon D Pusch; Maulik Shukla; James A Thomason; Rick Stevens; Veronika Vonstein; Alice R Wattam; Fangfang Xia
Journal:  Sci Rep       Date:  2015-02-10       Impact factor: 4.379

7.  Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.

Authors:  Bruce J Walker; Thomas Abeel; Terrance Shea; Margaret Priest; Amr Abouelliel; Sharadha Sakthikumar; Christina A Cuomo; Qiandong Zeng; Jennifer Wortman; Sarah K Young; Ashlee M Earl
Journal:  PLoS One       Date:  2014-11-19       Impact factor: 3.240

8.  Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.

Authors:  Alice R Wattam; James J Davis; Rida Assaf; Sébastien Boisvert; Thomas Brettin; Christopher Bun; Neal Conrad; Emily M Dietrich; Terry Disz; Joseph L Gabbard; Svetlana Gerdes; Christopher S Henry; Ronald W Kenyon; Dustin Machi; Chunhong Mao; Eric K Nordberg; Gary J Olsen; Daniel E Murphy-Olson; Robert Olson; Ross Overbeek; Bruce Parrello; Gordon D Pusch; Maulik Shukla; Veronika Vonstein; Andrew Warren; Fangfang Xia; Hyunseung Yoo; Rick L Stevens
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

9.  Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Authors:  Ryan R Wick; Louise M Judd; Claire L Gorrie; Kathryn E Holt
Journal:  PLoS Comput Biol       Date:  2017-06-08       Impact factor: 4.475

10.  Biocontrol Activity of Volatile-Producing Bacillus megaterium and Pseudomonas protegens Against Aspergillus and Penicillium spp. Predominant in Stored Rice Grains: Study II.

Authors:  Mohamed Mannaa; Ki Deok Kim
Journal:  Mycobiology       Date:  2018-03-27       Impact factor: 1.858
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