Literature DB >> 36129291

Whole-Genome Sequence of Cervid atadenovirus A from the Initial Cases of an Adenovirus Hemorrhagic Disease Epizootic of Black-Tailed Deer in Canada.

Oliver Lung1,2, Mathew Fisher1, Michelle Nebroski1, Glenna McGregor3, Helen Schwantje4, Tomy Joseph3.   

Abstract

A complete 30,616-nucleotide Cervid atadenovirus A genome was determined from the tissues of black-tailed deer that had died in 2020 in British Columbia, Canada. Unique, nonsynonymous single-nucleotide polymorphisms in the E1B, Iva2, and E4.3 coding regions and deletions totaling 74 nucleotides that were not observed in moose and red deer isolates were present.

Entities:  

Year:  2022        PMID: 36129291      PMCID: PMC9584332          DOI: 10.1128/mra.00662-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN: 2576-098X


  10 in total

Review 1.  The biology of the adenovirus E1B 55K protein.

Authors:  Paloma Hidalgo; Wing Hang Ip; Thomas Dobner; Ramón A Gonzalez
Journal:  FEBS Lett       Date:  2019-12-08       Impact factor: 4.124

2.  W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis.

Authors:  Jana Trifinopoulos; Lam-Tung Nguyen; Arndt von Haeseler; Bui Quang Minh
Journal:  Nucleic Acids Res       Date:  2016-04-15       Impact factor: 16.971

3.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

4.  Adenoviral hemorrhagic disease in California mule deer, 1990-2014.

Authors:  Leslie W Woods; Brant A Schumaker; Patricia A Pesavento; Beate M Crossley; Pamela K Swift
Journal:  J Vet Diagn Invest       Date:  2018-03-27       Impact factor: 1.279

5.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

6.  Enhanced virome sequencing using targeted sequence capture.

Authors:  Todd N Wylie; Kristine M Wylie; Brandi N Herter; Gregory A Storch
Journal:  Genome Res       Date:  2015-09-22       Impact factor: 9.043

7.  UFBoot2: Improving the Ultrafast Bootstrap Approximation.

Authors:  Diep Thi Hoang; Olga Chernomor; Arndt von Haeseler; Bui Quang Minh; Le Sy Vinh
Journal:  Mol Biol Evol       Date:  2018-02-01       Impact factor: 16.240

8.  ModelFinder: fast model selection for accurate phylogenetic estimates.

Authors:  Subha Kalyaanamoorthy; Bui Quang Minh; Thomas K F Wong; Arndt von Haeseler; Lars S Jermiin
Journal:  Nat Methods       Date:  2017-05-08       Impact factor: 28.547

9.  Genome Organization of Canada Goose Coronavirus, A Novel Species Identified in a Mass Die-off of Canada Geese.

Authors:  Amber Papineau; Yohannes Berhane; Todd N Wylie; Kristine M Wylie; Samuel Sharpe; Oliver Lung
Journal:  Sci Rep       Date:  2019-04-11       Impact factor: 4.379

10.  Discovery and comparative genomic analysis of elk circovirus (ElkCV), a novel circovirus species and the first reported from a cervid host.

Authors:  Mathew Fisher; Thomas M R Harrison; Michelle Nebroski; Peter Kruczkiewicz; Jamie L Rothenburger; Aruna Ambagala; Bryan Macbeth; Oliver Lung
Journal:  Sci Rep       Date:  2020-11-11       Impact factor: 4.996

  10 in total

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