Literature DB >> 3612789

Correlation of co-ordinated amino acid substitutions with function in viruses related to tobacco mosaic virus.

D Altschuh, A M Lesk, A C Bloomer, A Klug.   

Abstract

Sequence data are available for the coat proteins of seven tobamoviruses, with homologies ranging from at least 26% to 82%, and atomic co-ordinates are known for tobacco mosaic virus (TMV) vulgare. A significant spatial relationship has been found between groups of residues with identical amino acid substitution patterns. This strongly suggest that their location is linked to a particular function, at least in viruses identical with the wild-type for these residues. The most conserved feature of TMV is the RNA binding region. Core residues are conserved in all viruses or show mutations complementary in volume. The specificity of inter-subunit contacts is achieved in different ways in the three more distantly related viruses.

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Year:  1987        PMID: 3612789     DOI: 10.1016/0022-2836(87)90352-4

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  81 in total

1.  Functional aspects of co-variant surface charges in an antibody fragment.

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2.  Finding important sites in protein sequences.

Authors:  Peter J Bickel; Katherina J Kechris; Philip C Spector; Gary J Wedemayer; Alexander N Glazer
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-04       Impact factor: 11.205

Review 3.  Genomic biodiversity, phylogenetics and coevolution in proteins.

Authors:  David D Pollock
Journal:  Appl Bioinformatics       Date:  2002

4.  Coevolution of gene expression among interacting proteins.

Authors:  Hunter B Fraser; Aaron E Hirsh; Dennis P Wall; Michael B Eisen
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-02       Impact factor: 11.205

5.  FamClash: a method for ranking the activity of engineered enzymes.

Authors:  Manish C Saraf; Alexander R Horswill; Stephen J Benkovic; Costas D Maranas
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-23       Impact factor: 11.205

6.  Normal modes of symmetric protein assemblies. Application to the tobacco mosaic virus protein disk.

Authors:  T Simonson; D Perahia
Journal:  Biophys J       Date:  1992-02       Impact factor: 4.033

7.  Direct-coupling analysis of residue coevolution captures native contacts across many protein families.

Authors:  Faruck Morcos; Andrea Pagnani; Bryan Lunt; Arianna Bertolino; Debora S Marks; Chris Sander; Riccardo Zecchina; José N Onuchic; Terence Hwa; Martin Weigt
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-21       Impact factor: 11.205

8.  Accelerated evolution and coevolution drove the evolutionary history of AGPase sub-units during angiosperm radiation.

Authors:  Jonathan Corbi; Julien Y Dutheil; Catherine Damerval; Maud I Tenaillon; Domenica Manicacci
Journal:  Ann Bot       Date:  2012-02-02       Impact factor: 4.357

9.  Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis.

Authors:  Angel E Dago; Alexander Schug; Andrea Procaccini; James A Hoch; Martin Weigt; Hendrik Szurmant
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-05       Impact factor: 11.205

10.  Structural fingerprinting: subgrouping of comoviruses by structural studies of red clover mottle virus to 2.4-A resolution and comparisons with other comoviruses.

Authors:  T Lin; A J Clark; Z Chen; M Shanks; J B Dai; Y Li; T Schmidt; P Oxelfelt; G P Lomonossoff; J E Johnson
Journal:  J Virol       Date:  2000-01       Impact factor: 5.103

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