Literature DB >> 36125754

Small RNA-Sequencing Library Preparation for the Halophilic Archaeon Haloferax volcanii.

Diego Rivera Gelsinger1, Jocelyne DiRuggiero2.   

Abstract

Posttranscriptional regulation actuated by small RNAs (sRNAs) plays essential roles in a wide variety of cellular processes, especially in stress responses and environmental signaling. Hundreds of sRNAs have recently been discovered in archaea using genome-wide approaches but the molecular mechanisms of only a few have been characterized experimentally. Here, we describe how to build sRNA sequencing libraries using size-selected total RNA in the model archaeon, Haloferax volcanii , to provide a tool to further characterize sRNAs in archaea.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Haloarchaea; Noncoding RNA; Sequencing libraries; Small RNA; Transcription

Mesh:

Substances:

Year:  2022        PMID: 36125754     DOI: 10.1007/978-1-0716-2445-6_15

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  20 in total

Review 1.  Bacterial small RNA regulators: versatile roles and rapidly evolving variations.

Authors:  Susan Gottesman; Gisela Storz
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-12-01       Impact factor: 10.005

2.  Noncoding RNAs in Archaea: Genome-Wide Identification and Functional Classification.

Authors:  Anne Buddeweg; Michael Daume; Lennart Randau; Ruth A Schmitz
Journal:  Methods Enzymol       Date:  2018-09-22       Impact factor: 1.600

Review 3.  Unique Archaeal Small RNAs.

Authors:  José Vicente Gomes-Filho; Michael Daume; Lennart Randau
Journal:  Annu Rev Genet       Date:  2018-09-12       Impact factor: 16.830

Review 4.  Broadening the Definition of Bacterial Small RNAs: Characteristics and Mechanisms of Action.

Authors:  Marie-Claude Carrier; David Lalaouna; Eric Massé
Journal:  Annu Rev Microbiol       Date:  2018-09-08       Impact factor: 15.500

Review 5.  The noncoding RNA revolution-trashing old rules to forge new ones.

Authors:  Thomas R Cech; Joan A Steitz
Journal:  Cell       Date:  2014-03-27       Impact factor: 41.582

Review 6.  Regulation by small RNAs in bacteria: expanding frontiers.

Authors:  Gisela Storz; Jörg Vogel; Karen M Wassarman
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

7.  sRNA154 a newly identified regulator of nitrogen fixation in Methanosarcina mazei strain Gö1.

Authors:  Daniela Prasse; Konrad U Förstner; Dominik Jäger; Rolf Backofen; Ruth A Schmitz
Journal:  RNA Biol       Date:  2017-04-27       Impact factor: 4.652

8.  Transcriptional Landscape and Regulatory Roles of Small Noncoding RNAs in the Oxidative Stress Response of the Haloarchaeon Haloferax volcanii.

Authors:  Diego Rivera Gelsinger; Jocelyne DiRuggiero
Journal:  J Bacteriol       Date:  2018-04-09       Impact factor: 3.490

Review 9.  The Non-Coding Regulatory RNA Revolution in Archaea.

Authors:  Diego Rivera Gelsinger; Jocelyne DiRuggiero
Journal:  Genes (Basel)       Date:  2018-03-05       Impact factor: 4.096

10.  A Haloarchaeal Small Regulatory RNA (sRNA) Is Essential for Rapid Adaptation to Phosphate Starvation Conditions.

Authors:  Jana Kliemt; Katharina Jaschinski; Jörg Soppa
Journal:  Front Microbiol       Date:  2019-06-05       Impact factor: 5.640

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