Literature DB >> 36125283

Genome Sequence of Cupriavidus campinensis Strain G5, a Member of a Bacterial Consortium Capable of Polyethylene Degradation.

Beate Schneider1, Friedhelm Pfeiffer2, Mike Dyall-Smith2,3, Hans-Jörg Kunte1.   

Abstract

Nine different bacterial isolates were recovered from landfills. Each isolate was obtained in pure culture. As a consortium, the bacteria degrade polyethylene. The complete genome sequence of strain G5 was determined by PacBio sequencing. Using the TYGS for taxonomic classification, strain G5 was assigned to the species Cupriavidus campinensis.

Entities:  

Year:  2022        PMID： 36125283      PMCID： PMC9584319          DOI： 10.1128/mra.00553-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  11 in total

1.  In situ cultivation of previously uncultivable microorganisms using the ichip.

Authors:  Brittany Berdy; Amy L Spoering; Losee L Ling; Slava S Epstein
Journal:  Nat Protoc       Date:  2017-09-29       Impact factor: 13.491

2.  The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments.

Authors:  Paul J Janssen; Rob Van Houdt; Hugo Moors; Pieter Monsieurs; Nicolas Morin; Arlette Michaux; Mohammed A Benotmane; Natalie Leys; Tatiana Vallaeys; Alla Lapidus; Sébastien Monchy; Claudine Médigue; Safiyh Taghavi; Sean McCorkle; John Dunn; Daniël van der Lelie; Max Mergeay
Journal:  PLoS One       Date:  2010-05-05       Impact factor: 3.240

3.  Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia.

Authors:  Claire Amadou; Géraldine Pascal; Sophie Mangenot; Michelle Glew; Cyril Bontemps; Delphine Capela; Sébastien Carrère; Stéphane Cruveiller; Carole Dossat; Aurélie Lajus; Marta Marchetti; Véréna Poinsot; Zoé Rouy; Bertrand Servin; Maged Saad; Chantal Schenowitz; Valérie Barbe; Jacques Batut; Claudine Médigue; Catherine Masson-Boivin
Journal:  Genome Res       Date:  2008-05-19       Impact factor: 9.043

4.  Genome sequence-based species delimitation with confidence intervals and improved distance functions.

Authors:  Jan P Meier-Kolthoff; Alexander F Auch; Hans-Peter Klenk; Markus Göker
Journal:  BMC Bioinformatics       Date:  2013-02-21       Impact factor: 3.169

5.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

6.  Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.

Authors:  Sergey Koren; Brian P Walenz; Konstantin Berlin; Jason R Miller; Nicholas H Bergman; Adam M Phillippy
Journal:  Genome Res       Date:  2017-03-15       Impact factor: 9.043

7.  TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.

Authors:  Jan P Meier-Kolthoff; Markus Göker
Journal:  Nat Commun       Date:  2019-05-16       Impact factor: 14.919

8.  Genome Sequence of Micromonospora aurantiaca Strain G9, a Member of a Bacterial Consortium Capable of Polyethylene Degradation.

Authors:  Beate Schneider; Friedhelm Pfeiffer; Mike Dyall-Smith; Hans-Jörg Kunte
Journal:  Microbiol Resour Announc       Date:  2022-04-07

Review 9.  PacBio Sequencing and Its Applications.

Authors:  Anthony Rhoads; Kin Fai Au
Journal:  Genomics Proteomics Bioinformatics       Date:  2015-11-02       Impact factor: 7.691

10.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971
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