Literature DB >> 36125281

Draft Genome Sequence of Pseudomonas sp. Strains MWU12-2020 and MWU12-3103b, Isolated from Wild and Cultivated Cranberry Bogs in Massachusetts.

Andrea Ormsby1, Scott Soby1,2.   

Abstract

Here, we present the draft genome sequences of Pseudomonas sp. strains MWU12-2020 and MWU12-3103b, isolated from the rhizospheres of wild and cultivated cranberry bogs in southeastern Massachusetts; these strains are unrelated to known Pseudomonas species. The genomes of both isolates exceed 6 Mbp and contain predicted ice nucleation and type VI and III secretion system genes.

Entities:  

Year:  2022        PMID： 36125281      PMCID： PMC9584209          DOI： 10.1128/mra.00568-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  15 in total

Review 1.  The multifactorial basis for plant health promotion by plant-associated bacteria.

Authors:  Young Cheol Kim; Johan Leveau; Brian B McSpadden Gardener; Elizabeth A Pierson; Leland S Pierson; Choong-Min Ryu
Journal:  Appl Environ Microbiol       Date:  2011-01-07       Impact factor: 4.792

2.  Ice nucleation active bacteria in precipitation are genetically diverse and nucleate ice by employing different mechanisms.

Authors:  K C Failor; D G Schmale; B A Vinatzer; C L Monteil
Journal:  ISME J       Date:  2017-07-28       Impact factor: 10.302

3.  Genome-based evolutionary history of Pseudomonas spp.

Authors:  Cedar Hesse; Frederik Schulz; Carolee T Bull; Brenda T Shaffer; Qing Yan; Nicole Shapiro; Karl A Hassan; Neha Varghese; Liam D H Elbourne; Ian T Paulsen; Nikos Kyrpides; Tanja Woyke; Joyce E Loper
Journal:  Environ Microbiol       Date:  2018-07-22       Impact factor: 5.491

4.  Genome variations between rhizosphere and bulk soil ecotypes of a Pseudomonas koreensis population.

Authors:  Lucas Dantas Lopes; Michele de C Pereira E Silva; Alexandra J Weisberg; Edward W Davis; Qing Yan; Camila de S Varize; Chih-Feng Wu; Jeff H Chang; Joyce E Loper; Fernando D Andreote
Journal:  Environ Microbiol       Date:  2018-09-26       Impact factor: 5.491

5.  Tropical soils are a reservoir for fluorescent Pseudomonas spp. biodiversity.

Authors:  Lucas Dantas Lopes; Edward W Davis; Michele de C Pereira E Silva; Alexandra J Weisberg; Luana Bresciani; Jeff H Chang; Joyce E Loper; Fernando D Andreote
Journal:  Environ Microbiol       Date:  2017-11-10       Impact factor: 5.491

6.  RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.

Authors:  Thomas Brettin; James J Davis; Terry Disz; Robert A Edwards; Svetlana Gerdes; Gary J Olsen; Robert Olson; Ross Overbeek; Bruce Parrello; Gordon D Pusch; Maulik Shukla; James A Thomason; Rick Stevens; Veronika Vonstein; Alice R Wattam; Fangfang Xia
Journal:  Sci Rep       Date:  2015-02-10       Impact factor: 4.379

7.  Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.

Authors:  Alice R Wattam; James J Davis; Rida Assaf; Sébastien Boisvert; Thomas Brettin; Christopher Bun; Neal Conrad; Emily M Dietrich; Terry Disz; Joseph L Gabbard; Svetlana Gerdes; Christopher S Henry; Ronald W Kenyon; Dustin Machi; Chunhong Mao; Eric K Nordberg; Gary J Olsen; Daniel E Murphy-Olson; Robert Olson; Ross Overbeek; Bruce Parrello; Gordon D Pusch; Maulik Shukla; Veronika Vonstein; Andrew Warren; Fangfang Xia; Hyunseung Yoo; Rick L Stevens
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

8.  Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Authors:  Ryan R Wick; Louise M Judd; Claire L Gorrie; Kathryn E Holt
Journal:  PLoS Comput Biol       Date:  2017-06-08       Impact factor: 4.475

9.  TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.

Authors:  Jan P Meier-Kolthoff; Markus Göker
Journal:  Nat Commun       Date:  2019-05-16       Impact factor: 14.919

10.  Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions.

Authors:  Joyce E Loper; Karl A Hassan; Dmitri V Mavrodi; Edward W Davis; Chee Kent Lim; Brenda T Shaffer; Liam D H Elbourne; Virginia O Stockwell; Sierra L Hartney; Katy Breakwell; Marcella D Henkels; Sasha G Tetu; Lorena I Rangel; Teresa A Kidarsa; Neil L Wilson; Judith E van de Mortel; Chunxu Song; Rachel Blumhagen; Diana Radune; Jessica B Hostetler; Lauren M Brinkac; A Scott Durkin; Daniel A Kluepfel; W Patrick Wechter; Anne J Anderson; Young Cheol Kim; Leland S Pierson; Elizabeth A Pierson; Steven E Lindow; Donald Y Kobayashi; Jos M Raaijmakers; David M Weller; Linda S Thomashow; Andrew E Allen; Ian T Paulsen
Journal:  PLoS Genet       Date:  2012-07-05       Impact factor: 5.917
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