| Literature DB >> 36122672 |
Daisuke Tamura1, Hirokazu Yamagishi2, Yuji Morisawa3, Takashi Mato4, Shin Nunomiya5, Yuta Maehara6, Yasushi Ochiai7, Shinya Okuyama8, Narumi Ohmika9, Takanori Yamagata10, Hitoshi Osaka11.
Abstract
OBJECTIVES: We aimed to validate a newly developed antigen-detecting rapid diagnostic test (Ag-RDT) for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) using anterior nasal specimens.Entities:
Keywords: Nasal mucosa; Real-time polymerase chain reaction; SARS-CoV-2; Viral load
Year: 2022 PMID: 36122672 PMCID: PMC9481473 DOI: 10.1016/j.ijid.2022.09.018
Source DB: PubMed Journal: Int J Infect Dis ISSN: 1201-9712 Impact factor: 12.074
Summary of the characteristics, clinical course, and treatment of the participants
| Patient no. | Age (years [y], months [m]) | Days from onset to hospitalization | SARS-CoV-2 variant | Clinical manifestations | Therapy | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Cough | Nasal discharge | Respiratory distress | Wheezing or crackles | Remdesivir | Dexamethasone | Tocilizumab | ||||
| 1 | 76 y | 9 | NA | +a | + | + | + | + | + | |
| 2 | 28 y | 7 | B.1.1.33 | + | + | |||||
| 3 | 4 y | 5 | B.1.1.33 | + | ||||||
| 4 | 4 m | 6 | B.1.1.33 | + | ||||||
| 5 | 25 y | 9 | Alpha | + | + | |||||
| 6 | 46 y | 2 | Alpha | + | + | + | + | |||
| 7 | 57 y | 6 | B.1.1.33 | + | + | |||||
| 8 | 23 y | 2 | B.1.1.33 | + | + | |||||
| 9 | 2 y | 6 | Alpha | + | + | |||||
| 10 | 69 y | 7 | Alpha | + | + | + | + | + | + | + |
| 11 | 50 y | 5 | B.1.1.207 or B.1.177 | + | + | + | + | + | + | |
| 12 | 1 m | 3 | Delta | + | + | |||||
| 13 | 25 y | 1 | Delta | + | + | + | + | + | ||
| 14 | 56 y | 9 | Delta | + | + | + | + | + | + | |
| 15 | 48 y | 9 | Delta | + | + | + | + | |||
| 16 | 52 y | 8 | Delta | + | + | + | + | + | ||
aReported or observed. SARS-CoV-2: severe acute respiratory syndrome coronavirus 2
Figure 1Comparison of reverse transcription-polymerase chain reaction (RT-PCR) cycle threshold (Ct) values for the collected samples. The Ct values of specimens that were positive for severe acute respiratory syndrome coronavirus 2 antigen by RT-PCR are analyzed. The mean Ct value for all specimens is 31.1 (range: 19.6–41.0), the mean Ct value for anterior nasal specimens is 32.4 (range: 20.3–41.0), and the mean Ct value for nasopharyngeal specimens is 29.9 (range: 19.6–40.9). Mean Ct values are shown as horizontal bars.
Figure 2Comparison of reverse transcription-polymerase chain reaction (RT-PCR) cycle threshold (Ct) values of specimens collected over time from coronavirus disease (COVID-19) onset. The Ct values of the anterior nasal and nasopharyngeal specimens collected over time after COVID-19 onset are shown. In the anterior nasal specimens, there is no significant difference in the Ct values on day 1 after onset and day 16 after onset. There is also no significant difference in the Ct value of the nasopharyngeal specimens by time since onset. SE: standard error.
Diagnostic accuracy of two antigen-detecting rapid diagnostic tests for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) using anterior nasal and nasopharyngeal specimens
| Sensitivity (%) | 95% confidence interval (CI) | Specificity (%) | 95% CI | Detection limit by cycle threshold value | ||
|---|---|---|---|---|---|---|
| RapidTesta SARS-CoV-2 | Anterior nasal specimens | 81.9% (77/94) | 72.6–89.1% | 100% (19/19) | 82.4–100% | 41.0 |
| Nasopharyngeal specimens | 89.5% (94/105) | 82.0–94.7% | 100% (8/8) | 63.1–100% | 40.3 | |
| RapidTesta Reader | Anterior nasal specimens | 88.3% (83/94) | 80.0–94.0% | 100% (19/19) | 82.4–100% | 41.0 |
| Nasopharyngeal specimens | 89.5% (94/105) | 82.0–94.7% | 100% (8/8) | 63.1–100% | 40.3 | |
| ESPLINE SARS-CoV-2 | Anterior nasal specimens | 77.7% (73/94) | 67.9–85.6% | 100% (19/19) | 82.4–100% | 41.0 |
| Nasopharyngeal specimens | 81.9% (86/105) | 73.2–88.7% | 100% (8/8) | 63.1–100% | 40.3 |
All specimens are visually evaluated with RapidTesta SARS-CoV-2 and immediately read using a RapidTesta Reader. Visual analysis of ESPLINE SARS-CoV-2 is performed simultaneously with RapidTesta SARS-CoV-2.
Summary of the sensitivity of antigen-detecting rapid diagnostic test according to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variant
| Alpha | Delta | Other | |||||
|---|---|---|---|---|---|---|---|
| Sensitivity (%) | 95% confidence interval (CI) | Sensitivity (%) | 95% CI | Sensitivity (%) | 95% CI | ||
| RapidTesta SARS-CoV-2 | Anterior nasal specimens | 77.4% (24/31) | (58.9–90.4%) | 92.3% (24/26) | (74.9–99.1%) | 78.4% (29/37) | (61.8–90.2%) |
| Nasopharyngeal specimens | 82.5% (33/40) | (67.2–92.7%) | 92.3% (24/26) | (74.9–99.1%) | 94.9% (37/39) | (82.7–99.4%) | |
| RapidTesta Reader | Anterior nasal specimens | 80.6% (25/31) | (62.5–92.5%) | 92.3% (24/26) | (74.9–99.1%) | 91.9% (34/37) | (78.1–98.3%) |
| Nasopharyngeal specimens | 82.5% (33/40) | (67.2–92.7%) | 92.3% (24/26) | (74.9–99.1%) | 94.9% (37/39) | (82.7–99.4%) | |
| ESPLINE SARS-CoV-2 | Anterior nasal specimens | 71.0% (22/31) | (52.0–85.8%) | 76.9% (20/26) | (56.4–91.0%) | 83.8% (31/37) | (68.0–93.8%) |
| Nasopharyngeal specimens | 77.5% (31/40) | (61.5–89.2%) | 88.5% (23/26) | (69.8–97.6%) | 82.1% (32/39) | (66.5–92.5%) | |
Summary of antigen-detecting rapid diagnostic test for SARS-CoV-2 sensitivity and Specificity by days since coronavirus disease (COVID-19) onset
| <6 days | 7–9 days | >10 days | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sensitivity | 95%CI | Specificity | 95%CI | Sensitivity | 95%CI | Specificity | 95%CI | Sensitivity | 95%CI | Specificity | 95%CI | ||
| RapidTesta SARS-CoV-2 | Anterior nasal specimens | 100% (35/35) | (90.0–100%) | NA | 55.6% (15/27) | (35.3–74.5%) | 100% (3/3) | (29.2–100%) | 84.4% (27/32) | (67.2–94.7%) | 100% (5/5) | (47.8–100%) | |
| Nasopharyngeal specimens | 100% (35/35) | (90.0–100%) | NA | 83.9% (26/31) | (66.3–94.5%) | 100% (7/7) | (59.0–100%) | 84.6% (33/39) | (69.5–94.1%) | 100% (12/12) | (73.6–100%) | ||
| RapidTesta Reader | Anterior nasal specimens | 100% (35/35) | (90.0–100%) | NA | 70.4% (19/27) | (49.8–86.2%) | 100% (3/3) | (29.2–100%) | 90.6% (29/32) | (75.0–98.0%) | 100% (5/5) | (47.8–100%) | |
| Nasopharyngeal specimens | 100% (35/35) | (90.0–100%) | NA | 83.9% (26/31) | (66.3–94.5%) | 100% (7/7) | (59.0–100%) | 84.6% (33/39) | (69.5–94.1%) | 100% (12/12) | (73.6–100%) | ||
| ESPLINE SARS-CoV-2 | Anterior nasal specimens | 97.1% (34/35) | (85.1–99.9%) | NA | 51.9% (14/27) | (31.9–71.3%) | 100% (3/3) | (29.2–100%) | 78.1% (25/32) | (60.0–90.7%) | 100% (5/5) | (47.8–100%) | |
| Nasopharyngeal specimens | 100% (35/35) | (90.0–100%) | NA | 74.2% (23/31) | (55.4–88.1%) | 100% (7/7) | (59.0–100%) | 71.8% (28/39) | (55.1–85.0%) | 100% (12/12) | (73.6–100%) | ||
NA; Not applicable