Literature DB >> 36121235

Complete Genome Sequences of Two Bacteroides uniformis Bacteriophages.

Elsa M Bean1, Norma M Morella2, Neelendu Dey2,3,4.   

Abstract

Here, we describe the isolation and genomic annotation of two novel siphovirus species of bacteriophages that infect Bacteroides uniformis: Bacteroides phage EMB1 and Bacteroides phage EMB2. EMB1 has a 34,204-bp genome with 48 coding sequences, and EMB2 has a 34,008-bp genome with 47 coding sequences.

Entities:  

Year:  2022        PMID： 36121235      PMCID： PMC9584325          DOI： 10.1128/mra.00610-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  21 in total

1.  MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph.

Authors:  Dinghua Li; Chi-Man Liu; Ruibang Luo; Kunihiko Sadakane; Tak-Wah Lam
Journal:  Bioinformatics       Date:  2015-01-20       Impact factor: 6.937

Review 2.  Bacteriophages of the Human Gut: The "Known Unknown" of the Microbiome.

Authors:  Andrey N Shkoporov; Colin Hill
Journal:  Cell Host Microbe       Date:  2019-02-13       Impact factor: 21.023

Review 3.  Challenges & opportunities for phage-based in situ microbiome engineering in the gut.

Authors:  Peter J Voorhees; Carlos Cruz-Teran; Jasmine Edelstein; Samuel K Lai
Journal:  J Control Release       Date:  2020-06-19       Impact factor: 9.776

4.  Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes.

Authors:  Daniel A Russell
Journal:  Methods Mol Biol       Date:  2018

Review 5.  An introduction to sequence similarity ("homology") searching.

Authors:  William R Pearson
Journal:  Curr Protoc Bioinformatics       Date:  2013-06

6.  Regulators of gut motility revealed by a gnotobiotic model of diet-microbiome interactions related to travel.

Authors:  Neelendu Dey; Vitas E Wagner; Laura V Blanton; Jiye Cheng; Luigi Fontana; Rashidul Haque; Tahmeed Ahmed; Jeffrey I Gordon
Journal:  Cell       Date:  2015-09-24       Impact factor: 41.582

7.  Novel Siphoviridae Bacteriophages Infecting Bacteroides uniformis Contain Diversity Generating Retroelement.

Authors:  Stina Hedžet; Maja Rupnik; Tomaž Accetto
Journal:  Microorganisms       Date:  2021-04-21

8.  Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation.

Authors:  Jolene Ramsey; Helena Rasche; Cory Maughmer; Anthony Criscione; Eleni Mijalis; Mei Liu; James C Hu; Ry Young; Jason J Gill
Journal:  PLoS Comput Biol       Date:  2020-11-02       Impact factor: 4.475

9.  VIRIDIC-A Novel Tool to Calculate the Intergenomic Similarities of Prokaryote-Infecting Viruses.

Authors:  Cristina Moraru; Arvind Varsani; Andrew M Kropinski
Journal:  Viruses       Date:  2020-11-06       Impact factor: 5.048

10.  Bacteroides uniformis CECT 7771 ameliorates metabolic and immunological dysfunction in mice with high-fat-diet induced obesity.

Authors:  Paola Gauffin Cano; Arlette Santacruz; Ángela Moya; Yolanda Sanz
Journal:  PLoS One       Date:  2012-07-26       Impact factor: 3.240
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