Literature DB >> 36121218

Annotation of the Complete Genome Sequences of Bacteriophages Sara and Birdfeeder.

Benjamin M Adams1, Joseph B Adams1, Reganne L Brewster1, Michael S Cutler1, Anthony E Davis1, Abby H Gallegos1, Jeremy S Hernandez1, Luke H May1, Emma G Montoya1, Andrew T Reagan1, Jack F Shurley1, Anna S Grinath1, Michael A Thomas1.   

Abstract

Sara is a siphovirus with a linear 17,362bp genome containing 25 genes. Birdfeeder is a podovirus with a circularly permuted 53,897bp genome containing 52 genes. Sara and Birdfeeder were isolated from environmental samples in Plattsburgh, NY, USA and Forest Hill, MD, USA, respectively, using Microbacterium foliorum NRRL B-24224.

Entities:  

Year:  2022        PMID： 36121218      PMCID： PMC9584313          DOI： 10.1128/mra.00780-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  14 in total

1.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

2.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

3.  Consed: a graphical editor for next-generation sequencing.

Authors:  David Gordon; Phil Green
Journal:  Bioinformatics       Date:  2013-08-31       Impact factor: 6.937

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

5.  Phamerator: a bioinformatic tool for comparative bacteriophage genomics.

Authors:  Steven G Cresawn; Matt Bogel; Nathan Day; Deborah Jacobs-Sera; Roger W Hendrix; Graham F Hatfull
Journal:  BMC Bioinformatics       Date:  2011-10-12       Impact factor: 3.169

Review 6.  Phage Therapy in the Era of Multidrug Resistance in Bacteria: A Systematic Review.

Authors:  Carlos Aranaga; Lady Daniela Pantoja; Edgar Andrés Martínez; Aura Falco
Journal:  Int J Mol Sci       Date:  2022-04-21       Impact factor: 6.208

7.  GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.

Authors:  John Besemer; Mark Borodovsky
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

8.  The HHpred interactive server for protein homology detection and structure prediction.

Authors:  Johannes Söding; Andreas Biegert; Andrei N Lupas
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

9.  Bacteriophages of Gordonia spp. Display a Spectrum of Diversity and Genetic Relationships.

Authors:  Welkin H Pope; Travis N Mavrich; Rebecca A Garlena; Carlos A Guerrero-Bustamante; Deborah Jacobs-Sera; Matthew T Montgomery; Daniel A Russell; Marcie H Warner; Graham F Hatfull
Journal:  mBio       Date:  2017-08-15       Impact factor: 7.867

10.  Complete Genome Sequence of Microbacterium foliorum NRRL B-24224, a Host for Bacteriophage Discovery.

Authors:  Daniel A Russell; Rebecca A Garlena; Graham F Hatfull
Journal:  Microbiol Resour Announc       Date:  2019-01-31
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