| Literature DB >> 36120313 |
Ting Yu1, Yan-Xin Zhang2, Xin-Juan Liu1, Dan-Qing Chen3, Dan-Dan Wang2, Guo-Qin Zhu1,2, Qi Gao1,2.
Abstract
Ginseng (Panax ginseng C.A. Mey) is a kind of perennial herb of the Panax genus in the Araliaceae family. The secondary metabolites of mountain-cultivated ginseng (MCG) and garden ginseng (GG) vary greatly due to their different growth environments. To date, the differences in their pharmacological effects on cardiovascular diseases (CVDs) and their clinical applications remain unclear. To distinguish between the components of MCG and GG, ultra-high-performance liquid chromatography-quadrupole time-of-flight tandem mass spectrometry (UPLC-Q-TOF/MS) was performed. Next, the relationship between the expression of metabolites and the categories of the sample were analyzed using supervised partial least squares discriminant analysis and orthogonal partial least squares discriminant analysis. A network-based pharmacology approach was developed and applied to determine the underlying mechanism of different metabolites in CVD. In the present study, the role of MCG and GG in angiogenesis and their protective effects on damaged blood vessels in a vascular injury model of zebrafish were investigated. Using UPLC-Q-TOF/MS, 11 different metabolites between MCG and GG were identified. In addition, 149 common target genes associated with the metabolites and CVD were obtained; these targets were related to tumor protein P53, proto-oncogene tyrosine-protein kinase Src, human ubiquitin-52 amino acid fusion protein, ubiquitin-40S ribosomal protein S27a, polyubiquitin B, signal transducer and activator of transcription 3, isocitrate dehydrogenase 1, vascular endothelial growth factor A, glycose synthase kinase-3B, and coagulation factor II and were associated with the regulation of the phosphoinositide 3-kinase-Akt signaling pathway, the tumor necrosis factor signaling pathway, and the hypoxia-inducible factor-1 (HIF-1) signaling pathway, which play important roles in the curative effect in CVD treatment. Both types of ginseng can promote the growth of the subintestinal vessel plexus and protect injured intersegmental vessels through the HIF-1α/vascular endothelial growth factor signaling pathway in a dose-dependent manner. In addition, MCG has a stronger impact than GG. This is the first time metabolomics and network pharmacology methods were combined to study the difference between MCG and GG on CVDs, which provides a significant theoretical basis for the clinical treatment of CVD with two kinds of ginseng.Entities:
Keywords: CVD; GG; MCG; UPLC-Q-TOF/MS; network pharmacology; zebrafish
Year: 2022 PMID: 36120313 PMCID: PMC9474728 DOI: 10.3389/fphar.2022.920979
Source DB: PubMed Journal: Front Pharmacol ISSN: 1663-9812 Impact factor: 5.988
Docking scores of selected components and targets.
| Ingredient | Target | Docking score | Ingredient | Target | Docking score |
|---|---|---|---|---|---|
| Ginsenoside Rg3 | VEGFA | −7.77 | Ginsenoside Rg3 | HIF1 | −9.60 |
| Ginsenoside Re | VEGFA | −9.42 | Ginsenoside Re | HIF1 | −8.10 |
| Ginsenoside B2 | VEGFA | −7.59 | Ginsenoside B2 | HIF1 | −9.24 |
| Ginsenoside C | VEGFA | −7.44 | Ginsenoside C | HIF1 | −9.28 |
| Ginsenoside Rg3 | IL-6 | −7.50 | Ginsenoside Rg3 | TNF | −8.12 |
| Ginsenoside Re | IL-6 | −9.41 | Ginsenoside Re | TNF | −9.24 |
| Ginsenoside B2 | IL-6 | −8.69 | Ginsenoside B2 | TNF | −9.03 |
| Ginsenoside C | IL-6 | −10.06 | Ginsenoside C | TNF | −7.77 |
FIGURE 1Differential metabolites between mountain-cultivated ginseng (MCG) and garden ginseng (GG) determined by ultra-high-performance liquid chromatography-quadrupole time-of-flight tandem mass spectrometry. The total ion chromatograms of MCG and GG in negative ions. (A) MCG and (B) GG. The results of statistical analysis from the ginseng samples. (C) Partial least squares discriminant analysis (PLS-DA) score plot, (D) permutation test, (E) orthogonal partial least squares discriminant analysis (OPLS-DA) score plot, and (F) permutation test.
Eleven differential metabolites between mountain-cultivated ginseng and garden ginseng.
| No. | tR (min) | Precursor ion and/or adduct ions | Error (ppm) | Formula | Identification | VIP value |
|---|---|---|---|---|---|---|
| 1 | 8.83 | 409.2293 [M-H]- | −16.45 | C19H39O7P | 1-Palmitoyl Lysophosphatidic Acid | 6.3956 |
| 2 | 7.08 | 829.4938 [M -H + HCOOH]- | −4.39 | C42H72O13 | Ginsenoside Rg3 | 5.3053 |
| 3 | 3.89 | 991.5495 [M -H + HCOOH]- | 2.88 | C48H82O18 | Ginsenoside Re | 4.2148 |
| 4 | 5.82 | 991.5476 [M -H + HCOOH]- | 1.00 | C48H82O18 | Ginsenoside B2 | 3.9941 |
| 5 | 5.07 | 815.4793 [M -H + HCOOH]- | −0.97 | C41H70O13 | Ginsenoside F5 | 3.0355 |
| 6 | 6.84 | 829.4942 [M -H + HCOOH]- | −0.97 | C42H72O13 | Ginsenoside C | 2.1929 |
| 7 | 0.76 | 191.0189 [M-H]- | −4.54 | C6H8O7 | Citric acid | 1.9622 |
| 8 | 0.59 | 173.0921 [M-H]- | −5.88 | C7H14N2O3 | N2-Acetyl-L-ornithine | 1.3699 |
| 9 | 8.87 | 783.3188 [M-H-2Glc-Xyl]- | 5.74 | C59H100O27 | Notoginsenoside Fa | 1.3030 |
| 10 | 1.58 | 164.0718 [M-H]- | 0.41 | C9H11NO2 | L-Phenylalanine | 1.1431 |
| 11 | 8.71 | 689.4093 [M + Cl]- | 8.50 | C36H62O10 | Ginsenoside M7cd | 1.0106 |
FIGURE 2Target screening and network construction. (A) The venn diagram of the targets of gingseng and cardiovascular diseases (CVDs). (B) “Components-targets” network. The yellow circles represent the common targets of gingseng and CVD; the red triangle represents the differential components between MCG and GG. (C) Protein–protein interaction (PPI) network. The higher the degree value, the more red the color and the larger the shape. (D) Five closely connected submodules in the network. The 5-nucleon module is the interaction between tumor protein receptors, the 3-nucleon and 1-nucleon module is the interaction between cardiovascular pathway-related proteins, and the 2-nucleon module is the interaction between inflammation-related proteins.
Top 15 pathways for Kyoto Encyclopedia of Genes and Genomes analysis.
| Term | Count |
| Genes |
|---|---|---|---|
| Metabolic pathways | 34 | 9.43E-04 | OTC, BCAT1, HSD17B3, GLUD2, EPHX2, ACACA, OAT, NOS2, PLA2G5, CYP11A1, SMPD2, FDFT1, TH, AK1, NOS1, NOS3, LTC4S, NDUFAB1, CYP3A4, KYNU, GNE, HSD11B2, ANPEP, OXSM, ASS1, HSD11B1, PFAS, ACACB, HPSE, NAGS, FDPS, PLA2G2A, PTGS2, KMO |
| Pathways in cancer | 26 | 1.37E-07 | RB1, MAPK8, FOS, BCL2, BCL2L1, MMP9, F2, NOS2, LPAR2, XIAP, HSP90AA1, IFNG, FGF1, BAX, IL4, FGF2, IL2, VEGFA, LPAR1, CASP3, MAPK9, EGFR, STAT3, PPARG, ITGA2B, PTGS2 |
| PI3K-Akt signaling pathway | 15 | 1.42E-03 | BCL2, BCL2L1, SYK, LPAR2, HSP90AA1, FGF1, NOS3, IL4, FGF2, IL2, VEGFA, LPAR1, RBL2, EGFR, ITGA2B |
| Fluid shear stress and atherosclerosis | 13 | 7.77E-07 | MAPK8, FOS, BCL2, MMP9, HSP90AA1, IL1B, IFNG, NOS3, TNF, VEGFA, ASS1, MAPK9, ITGA2B |
| IL-17 signaling pathway | 11 | 9.20E-07 | MAPK8, FOS, MMP9, HSP90AA1, IL1B, IFNG, IL4, TNF, CASP3, MAPK9, PTGS2 |
| Necroptosis | 11 | 7.89E-05 | MAPK8, BCL2, GLUD2, XIAP, HSP90AA1, IL1B, IFNG, BAX, TNF, MAPK9, STAT3 |
| MAPK signaling pathway | 11 | 4.42E-03 | MAPK8, FOS, CACNA2D1, IL1B, FGF1, FGF2, TNF, VEGFA, CASP3, MAPK9, EGFR |
| AGE-RAGE signaling pathway in diabetic complications | 10 | 1.28E-05 | MAPK8, BCL2, IL1B, NOS3, BAX, TNF, VEGFA, CASP3, MAPK9, STAT3 |
| Sphingolipid signaling pathway | 10 | 5.18E-05 | MAPK8, BCL2, SMPD2, ADORA3, FYN, NOS3, BAX, TNF, ABCC1, MAPK9 |
| Small cell lung cancer | 9 | 4.36E-05 | RB1, BCL2, BCL2L1, NOS2, XIAP, BAX, CASP3, ITGA2B, PTGS2 |
| Th17 cell differentiation | 9 | 1.09E-04 | MAPK8, FOS, HSP90AA1, IL1B, IFNG, IL4, IL2, MAPK9, STAT3 |
| Apoptosis | 9 | 4.47E-04 | MAPK8, FOS, BCL2, BCL2L1, XIAP, BAX, TNF, CASP3, MAPK9 |
| T-cell receptor signaling pathway | 8 | 5.69E-04 | MAPK8, FOS, FYN, IFNG, IL4, IL2, TNF, MAPK9 |
| TNF signaling pathway | 8 | 5.20E-04 | MAPK8, FOS, MMP9, IL1B, TNF, CASP3, MAPK9, PTGS2 |
| HIF-1 signaling pathway | 7 | 3.10E-03 | BCL2, NOS2, IFNG, NOS3, VEGFA, EGFR, STAT3 |
FIGURE 3Molecular docking results of selected components and targets.
FIGURE 4Effect of MCG and GG on subintestinal vessel plexus (SIV) growth in zebrafish. Healthy embryos that were developed 24 h post-fertilization (hpf) were removed and treated with various concentrations of MCG and GG (25, 50, 100 μg/ml) for 48 h. (A,B) Survival rate and hatching rate of 72 hpf zebrafish embryos. (C,D) Heart rate and number of autonomous movements of 72 hpf zebrafish embryos. (E) SIV growth after MCG and GG treatment in zebrafish. Red arrows indicate the crossing vessels, and yellow arrows indicate the sprouting vessels of SIVs. (F,G) Sprouting and crossing vessel numbers of SIVs were calculated in each embryo, and data are represented as the mean ± standard error of the mean. n = 3. *p < 0.05, **p < 0.01, ***p < 0.001, ****p < 0.0001 versus the control group. # p < 0.05, ## p < 0.01, ### p < 0.001 compared with the GG (25 μg/ml)-treated group.
FIGURE 5Effect of MCG and GG on intersegmental vessel (ISV) growth in zebrafish. The embryos at 21 hpf were pretreated with 0.2 μg/ml PTK787 (VEGF receptor inhibitor) for 3 h and then treated with various concentrations of MCG and GG (25, 50, 100 μg/ml) for 48 h. (A) ISV growth after MCG and GG treatment in zebrafish. (B) ISV length was calculated in zebrafish embryos. (C) The mRNA expression of VEGFR2 was analyzed using RT-PCR. Data are represented as the mean ± standard error of the mean. n = 3. *p < 0.05, **p < 0.01, ***p < 0.001, ****p < 0.0001 versus the PTK787 group; # p < 0.05, #### p < 0.0001 compared with the GG (25 μg/ml)-treated group.
FIGURE 6Effects of MCG and GG on the targets related to angiogenesis by RT-PCR. Relative mRNA expression levels of VEGF, HIF1A, TNF-α, IL-6, and IL-1β. Data are represented as the mean ± standard error of the mean. n = 3. *p < 0.05, **p < 0.01, ***p < 0.001, ****p < 0.0001 versus the PTK787 group; ## p < 0.01, ### p < 0.001, #### p < 0.0001 compared with the GG (25 μg/ml)-treated group.