| Literature DB >> 36115989 |
Wenhua Duan1, Taicheng Zhou2, Huawei Jiang1, Minhui Zhang3, Min Hu2, Liwei Zhang4.
Abstract
BACKGROUND: Leber's congenital amaurosis (LCA) is a severe hereditary retinopathy disease that is characterized by early and severe reduction of vision, nystagmus, and sluggish or absent pupillary responses. To date, the pathogenesis of LCA remains unclear, and the majority of cases are caused by autosomal recessive inheritance. In this study, we explored the variant in the Crumbs homologue 1 (CRB1) gene in a Chinese family with LCA.Entities:
Keywords: Crumbs homologue 1 (CRB1); Leber’s congenital amaurosis; Variant
Mesh:
Substances:
Year: 2022 PMID: 36115989 PMCID: PMC9482190 DOI: 10.1186/s12920-022-01356-z
Source DB: PubMed Journal: BMC Med Genomics ISSN: 1755-8794 Impact factor: 3.622
Fig. 1Pedigree of the LCA family with a CRB1 variant, sequencing chromatogram, and diagnostic fundus. a Pedigree of the LCA family with a CRB1 variant. The proband is marked by an arrow, black symbols denote affected members, white symbols denote unaffected members, squares denote males, and circles denote females. b Sequencing chromatograms. The affected proband showed a homozygous variant in the CRB1 gene: nucleotide 1499 changed from a cytosine to guanine (c.1499C>G) homozygous variant, resulting in a nonsense variant of amino acids (p. S500*), her parents and sister show a heterozygous variant at the same site. c Diagnosis of the fundus. Both eyes of the proband showed pigmentation of the retina at the posterior pole that was peppery and salt-like, and the macular area was a mass of lesions with a large amount of pigmentation. d Her 5-year-old sister’s fundus is normal, and the same is true for her parents
Clinical examination data
| Patient | Gender | Age | Nucleotide amino acid | Homozygous/heterozygous | UCVA | CVA | Corneal optical refection | Nystagmus | Globe retraction | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| OD | OS | OD | OS | ||||||||
| II:5 | M | 34 | c.1499C>G (p.S500*) | Heterozygous | 1.0 | 1.0 | 1.0 | 1.0 | Normal | − | − |
| II:8 | F | 28 | c.1499C>G (p.S500*) | Heterozygous | 0.6 | 0.7 | 1.0 | 1.0 | Normal | − | − |
| III:1 | F | 5 | c.1499C>G (p.S500*) | Heterozygous | 0.6 | 0.6 | 0.8 | 0.8 | Normal | − | − |
| III:2 | F | 2 | c.1499C>G (p.S500*) | Homozygous | unable | unable | unable | unable | Normal | + | − |
Features of LCA8 and unaffected relatives
UCVA uncorrected visual acuity, CVA corrected visual acuity, OD right eye, OS left eye, +: positive, −: negative
Summary of CRB1 variants causing LCA8
| Exon | Variant type | DNA change | Amino acid change | Region | References |
|---|---|---|---|---|---|
| Ex1 | Substitution | c.2T>C | p.M1T | Japanese | Hosono et al. [ |
| Ex1 | Substitution | c.70+2T>A | – | Chinese | Zhu et al. [ |
| Ex2 | Substitution | c.107C>G | p.S36* | Pakistan | McKibbin et al. [ |
| Ex2 | Substitution | c.424G>T | p.G142* | uncertain | Beryozkin et al. [ |
| Ex2 | Substitution | c.471C>A | p.C157* | Chinese | Zhu et al. [ |
| Ex2 | Duplication | c.481dupG | p.A161Gfs*8 | Spanish | Corton et al. [ |
| Ex2 | Deletion | c.498_506del | p.I167_G169del | England | Ahmed et al. [ |
| Ex2 | Deletion | c.613_619del | p.I205Dfs*13 | Spanish | Corton et al. [ |
| Ex2 | Substitution | c.614T>C | p.I205T | England | Henderson et al. [ |
| Ex3 | Substitution | c.664G>A | p.E222K | Chinese | Li et al. [ |
| Ex3 | Duplication | c.668dupT | p.L223Ffs*4 | Japanese | Hosono et al. [ |
| Ex3 | Duplication | c.733dupG | p.A245Gfs*16 | Japanese | Hosono et al. [ |
| Ex3 | Substitution | c.866C>T | p.T289M | Italian | Simonelliet al. [ |
| Ex3 | Substitution | c.998G>A | p.G333D | Korea | Moon et al. [ |
| Ex6 | Deletion | c.1334_1740del | p.C445Yfs*8 | Japanese | Hosono et al. [ |
| Ex6 | Substitution | c.1405T>G | p.C469G | Chinese | Zhu et al. [ |
| Ex6 | Substitution | c.1429G>A | p.G477R | Chinese | Yang et al. [ |
| Ex6 | Substitution | c.1499C>G | p.S500* | Chinese | this study |
| Ex6 | Duplication | c.1567dupC | p.L523Pfs*28 | Japanese | Hosono et al. [ |
| Ex6 | Substitution | c.1576C>T | p.R526* | Chinese | Yang et al. [ |
| Ex6 | Substitution | c.1604T>C | p.L535P | Spanish | Corton et al. [ |
| Ex6 | Substitution | c.1678C>G | p.H560D | Chinese | Zhu et al. [ |
| Ex6 | Substitution | c.1690G>T | p.D564Y | Spanish | Corton et al. [ |
| Ex6 | Substitution | c.1750G>T | p.D584N | Uncertain | Hanein et al. [ |
| Ex6 | Substitution | c.1831T>C | p.S611P | Chinese | Yang et al. [ |
| Ex6 | Substitution | c.1841G>T | p.G614V | Chinese | Chen et al. [ |
| Ex6 | Deletion | c.1842delT | p.G614Gfs*6 | Uncertain | Beryozkin et al. [ |
| Ex6 | Substitution | c.1903T>C | p.S635P | Chinese | Li et al. [ |
| Ex6 | Substitution | c.2107G>T | p.E703* | Iran | Saberi et al. [ |
| Ex6 | Substitution | c.2128G>C | p.E710Q | Uncertain | Hanein et al. [ |
| Ex6 | Substitution | c.2128+1G>A | - | Iran | Saberi et al. [ |
| Ex7 | Substitution | c.2222T>C | p.M741T | Uncertain | Hanein et al. [ |
| Ex7 | Deletion | c.2227delG | p.V743Sfs*11 | Spanish | Corton et al. [ |
| Ex7 | Substitution | c.2234C>T | p.T745M | Chinese | Yang et al. [ |
| Ex7 | Deletion | c.2244_47del | p.S749del | Spanish | Corton et al. [ |
| Ex7 | Duplication | c.2276_2279dupCTTA | p.S758Sfs*33 | Iran | Saberi et al. [ |
| Ex7 | Substitution | c.2290C>T | p.R764C | Uncertain | Hanein et al. [ |
| Ex7 | Substitution | c.2309G>T | p.G770V | Spanish | Corton et al. [ |
| Ex7 | Substitution | c.2401A>T | p.K801* | Italian | Simonelli et al. [ |
| Ex7 | Substitution | c.2479G>T | p.G827* | Uncertain | Hanein et al. [ |
| Ex7 | Substitution | c.2536G>T | p.G846* | Hungarian | Vamos et al. [ |
| Ex7 | Substitution | c.2548G>A | p.G850S | England | Henderson et al. [ |
| Ex7 | Substitution | c.2555T>C | p.I852T | Uncertain | Hanein et al. [ |
| Ex7 | Deletion | c.2676delG* | p.K892Nfs*95 | England | Henderson et al. [ |
| Ex8 | Substitution | c.2677-2A>C | – | Chinese | Lin Li et al. [ |
| Ex8 | Deletion | c.2678-2682del | p.S893Sfs*14 | Uncertain | Beryozkin et al. [ |
| Ex8 | Substitution | c.2688T>A | p.C896* | Spanish | Corton et al. [ |
| Ex8 | Substitution | c.2714G>A | p.R905Q | Chinese | Zhu et al. [ |
| Ex9 | Substitution | c.2843G>A | p.C948Y | Polish | Skorczyk et al. [ |
| Ex9 | Substitution | c.2843G>T | p.C948F | Uncertain | Hanein et al. [ |
| Ex9 | Insertion | c.2853_2854insT | p.A952fs*972 | Uncertain | Hanein et al. [ |
| Ex9 | Substitution | c.2945C>A | p.T982K | Chinese | Zhu et al. [ |
| Ex9 | Substitution | c.3002T>A | p.I1001N | Spanish | Corton et al. [ |
| Ex9 | Substitution | c.3017C>A | p.S1006Y | Chinese | Zhu et al. [ |
| Ex9 | Substitution | c.3023T>G | p.L1008* | Chinese | Zhu et al. [ |
| Ex9 | Deletion | c.3059delT | p.M1020Sfs*1 | Chinese | Yang et al. [ |
| Ex9 | Substitution | c.3068T>G | p.L1023R | Japanese | Hosono et al. [ |
| Ex9 | Substitution | c.3074G>T | p.S1025I | Uncertain | Hanein et al. [ |
| Ex9 | Substitution | c.3152 G>A | p.W1051* | Spanish | Corton et al. [ |
| Ex9 | Substitution | c.3218T>A | p.L1073Q | Chinese | Zhu et al. [ |
| Ex9 | Substitution | c.3221T>C | p.L1074S | Chinese | Lin Li et al.[ |
| Ex9 | Substitution | c.3290T>A | p.L1097Q | Chinese | Zhu et al. [ |
| Ex9 | Substitution | c.3299T>C | p.I1100T | Spanish | Corton et al. [ |
| Ex9 | Substitution | c.3307G>A | p.G1103R | Italian | Simonelli et al. [ |
| Ex9 | Substitution | c.3320T>G | p.L1107R | Uncertain | Hanein et al. [ |
| Ex9 | Deletion | c.3345delT | p.G1115fs*1140 | Uncertain | Hanein et al. [ |
| Ex9 | Substitution | c.3466G>T | p.D1156Y | Uncertain | Hollanderet al. [ |
| Ex9 | Substitution | c.3482A>G | p.Y1161C | Spanish | Corton et al. [ |
| Ex9 | Duplication | c.3542dupG | p.C1181Wfs*12 | England | Henderson et al. [ |
| Ex11 | Substitution | c.3879G>A | p.W1293* | Uncertain | Hanein et al. [ |
| Ex11 | Substitution | c.3961T>A | p.C1321G | Uncertain | Hanein et al. [ |
| Ex11 | Deletion | c.3988delG | p.E1330fs*1340 | Uncertain | Hanein et al. [ |
| Ex11 | Deletion | c.4000delG | p.V1334W fs*7 | Spanish | Corton et al. [ |
| Ex12 | Substitution | c.4005+1G>A | – | Chinese | Zhu et al. [ |
| Ex12 | Substitution | c.4013+1G>T | – | Uncertain | Hollanderet al. [ |
| Ex12 | Deletion | c.4121_4130del | p.R1374fs*1397 | Uncertain | Hanein et al. [ |
Types and proportion of CRB1 variants causing LCA8
| Types of variants | Substitution | Deletion | Duplication | Insertion |
|---|---|---|---|---|
| Count | 56 | 13 | 6 | 1 |
| Percentage | 73.7% | 17.1% | 7.9% | 1.3% |
Numbers and proportion of CRB1 exon variants causing LCA8
| Exon | Ex1 | Ex2 | Ex3 | Ex4 | Ex5 | Ex 6 | Ex 7 | Ex8 | Ex9 | Ex10 | Ex11 | Ex12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Count | 2 | 7 | 5 | 0 | 0 | 17 | 13 | 4 | 21 | 0 | 4 | 3 |
| Percentage | 2.6% | 9.2% | 6.6% | 0 | 0 | 22.4% | 17.1% | 5.3% | 27.6% | 0 | 5.3% | 3.9% |