| Literature DB >> 36110421 |
Yuxuan Zhang1, Xinyi Zhang1, Delong Chen1, Jia Lu2, Qinyan Gong1, Jiacheng Fang1, Jun Jiang1,3.
Abstract
Background: Observational studies have shown gut microbiomes were associated with cardiovascular diseases (CVDs), but their roles remain controversial, and these associations have not yet been established causally.Entities:
Keywords: Clostridiaceae; Mendelian randomization; Oxalobacter; cardiovascular disease; causality; gut microbiome
Year: 2022 PMID: 36110421 PMCID: PMC9470126 DOI: 10.3389/fcvm.2022.971376
Source DB: PubMed Journal: Front Cardiovasc Med ISSN: 2297-055X
Figure 1Study flow diagram. Dashed lines indicate potential pleiotropic or direct causal effects between variables that may violate MR assumptions. IV, instrumental variable; CAD, coronary artery disease; MI, myocardial infarction; HF, heart failure; AF, atrial fibrillation; IS, ischemic stroke; CES, cardioembolic stroke; LAS, large-artery atherosclerotic stroke; SVS, small-vessel stroke; IVW, multiplicative random effects inverse-variance weighted; MR, Mendelian randomization; WME, weighted-median estimator; MR-PRESSO, MR pleiotropy residual sum and outlier.
MR results of causal links between gut microbiome and CVDs risk (P < 1 × 10-5).
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| CAD | Genus | Oxalobacter | 12 | MR Egger | 0.156 | 0.070 | 1.17(1.02–1.34) | 0.051 | −0.014 | 0.010 | 0.193 | 3.877 | 0.953 | 0.896 |
| IVW | 0.061 | 0.016 | 1.06(1.03–1.10) | 1.67 × 10−4 | ||||||||||
| Weighted median | 0.066 | 0.022 | 1.07(1.03–1.12) | 0.003 | ||||||||||
| Weighted mode | 0.067 | 0.035 | 1.07(0.99–1.14) | 0.081 | ||||||||||
| Stroke | Family | Clostridiaceae 1 | 11 | MR Egger | −0.352 | 0.180 | 0.70(0.49–1.00) | 0.083 | 0.012 | 0.013 | 0.358 | 14.289 | 0.112 | 0.145 |
| IVW | −0.186 | 0.055 | 0.83(0.75–0.93) | 7.76 × 10−4 | ||||||||||
| Weighted median | −0.180 | 0.063 | 0.84(0.74–0.95) | 0.004 | ||||||||||
| Weighted mode | −0.200 | 0.108 | 0.82(0.66–1.01) | 0.092 | ||||||||||
| Ischemic stroke | Family | Clostridiaceae 1 | 11 | MR Egger | −0.328 | 0.176 | 0.72(0.51–1.02) | 0.095 | 0.010 | 0.012 | 0.449 | 5.405 | 0.798 | 0.851 |
| IVW | −0.196 | 0.055 | 0.82(0.74–0.92) | 4.15 × 10−4 | ||||||||||
| Weighted median | −0.195 | 0.076 | 0.82(0.71–0.96) | 0.010 | ||||||||||
| Weighted mode | −0.183 | 0.107 | 0.83(0.68–1.03) | 0.117 | ||||||||||
SNP, single nucleotide polymorphism; OR, odds ratio; MR-PRESSO, Mendelian randomization pleiotropy residual sum and outlier; CAD, coronary artery disease; IVW, multiplicative random effects inverse-variance weighted.
Characteristics of SNPs used for gut microbiome in MR analyses (P < 1 × 10−5).
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| Family Clostridiaceae1 | rs56188186 | A | G | 0.076 | 0.097 | 0.022 | 8.24E-06 | 13,218 | 0.001 | 19.801 |
| rs12490337 | C | G | 0.246 | −0.062 | 0.014 | 6.91E-06 | 14,253 | 0.001 | 20.297 | |
| rs62397761 | A | G | 0.286 | 0.062 | 0.014 | 9.08E-06 | 14,248 | 0.001 | 20.440 | |
| rs2817172 | C | T | 0.413 | 0.056 | 0.012 | 5.27E-06 | 13,789 | 0.001 | 20.665 | |
| rs10875374 | C | T | 0.448 | −0.054 | 0.012 | 8.10E-06 | 14,253 | 0.001 | 20.194 | |
| rs881532 | A | G | 0.523 | −0.053 | 0.012 | 7.90E-06 | 14,250 | 0.001 | 20.058 | |
| rs12186080 | G | A | 0.839 | 0.075 | 0.016 | 5.34E-06 | 14,244 | 0.001 | 21.209 | |
| rs550843 | T | C | 0.851 | −0.073 | 0.017 | 7.09E-06 | 14,234 | 0.001 | 19.040 | |
| rs12341505 | G | A | 0.889 | 0.081 | 0.018 | 4.54E-06 | 14,250 | 0.001 | 20.624 | |
| rs4723021 | T | C | 0.942 | −0.106 | 0.024 | 7.42E-06 | 13,682 | 0.001 | 19.328 | |
| rs2795528 | G | A | 0.951 | −0.181 | 0.039 | 3.81E-06 | 6,411 | 0.003 | 21.425 | |
| Genus. Oxalobacter | rs12002250 | A | C | 0.060 | 0.217 | 0.047 | 1.42E-06 | 4,297 | 0.005 | 21.669 |
| rs36057338 | G | T | 0.076 | 0.208 | 0.042 | 8.80E-07 | 4,244 | 0.006 | 24.312 | |
| rs11108500 | A | G | 0.077 | −0.199 | 0.043 | 3.74E-06 | 4,303 | 0.005 | 21.698 | |
| rs1569853 | T | C | 0.138 | −0.138 | 0.030 | 3.65E-06 | 4,492 | 0.005 | 21.607 | |
| rs6000536 | C | T | 0.211 | −0.131 | 0.025 | 2.06E-07 | 4,654 | 0.006 | 26.626 | |
| rs736744 | C | T | 0.585 | 0.118 | 0.021 | 2.57E-08 | 4655 | 0.007 | 31.122 | |
| rs6071435 | T | A | 0.636 | −0.106 | 0.021 | 1.07E-06 | 4,635 | 0.005 | 24.098 | |
| rs4428215 | G | A | 0.740 | 0.130 | 0.024 | 7.51E-08 | 4,655 | 0.006 | 28.918 | |
| rs10464997 | G | A | 0.847 | 0.138 | 0.029 | 3.30E-06 | 4,650 | 0.005 | 21.805 | |
| rs6993398 | G | A | 0.847 | 0.127 | 0.028 | 7.13E-06 | 4,656 | 0.004 | 20.804 | |
| rs3862635 | C | T | 0.922 | −0.172 | 0.039 | 9.19E-06 | 4,469 | 0.004 | 19.078 | |
| rs111966731 | T | C | 0.928 | 0.213 | 0.047 | 7.30E-06 | 3,931 | 0.005 | 20.409 |
SNP, single nucleotide polymorphism; EA, effect allele; OA, other allele; SE, standard error.