Literature DB >> 36109670

Single-cell atlas of human liver development reveals pathways directing hepatic cell fates.

Brandon T Wesley1,2, Alexander D B Ross1,2,3, Sarah A Teichmann4,5, Ludovic Vallier6,7, Daniele Muraro1,2,4, Zhichao Miao4,8, Sarah Saxton9,10, Rute A Tomaz1,2, Carola M Morell1,2, Katherine Ridley1,3, Ekaterini D Zacharis1,2, Sandra Petrus-Reurer2,11, Judith Kraiczy3, Krishnaa T Mahbubani2, Stephanie Brown1,2, Jose Garcia-Bernardo4, Clara Alsinet4, Daniel Gaffney4, Dave Horsfall12, Olivia C Tysoe1,2, Rachel A Botting13, Emily Stephenson13, Dorin-Mirel Popescu13, Sonya MacParland14, Gary Bader14, Ian D McGilvray15, Daniel Ortmann1,2, Fotios Sampaziotis1,2, Kourosh Saeb-Parsy2,11, Muzlifah Haniffa4,13,16, Kelly R Stevens9,10, Matthias Zilbauer1,3.   

Abstract

The liver has been studied extensively due to the broad number of diseases affecting its vital functions. However, therapeutic advances have been hampered by the lack of knowledge concerning human hepatic development. Here, we addressed this limitation by describing the developmental trajectories of different cell types that make up the human liver at single-cell resolution. These transcriptomic analyses revealed that sequential cell-to-cell interactions direct functional maturation of hepatocytes, with non-parenchymal cells playing essential roles during organogenesis. We utilized this information to derive bipotential hepatoblast organoids and then exploited this model system to validate the importance of signalling pathways in hepatocyte and cholangiocyte specification. Further insights into hepatic maturation also enabled the identification of stage-specific transcription factors to improve the functionality of hepatocyte-like cells generated from human pluripotent stem cells. Thus, our study establishes a platform to investigate the basic mechanisms directing human liver development and to produce cell types for clinical applications.
© 2022. The Author(s), under exclusive licence to Springer Nature Limited.

Entities:  

Year:  2022        PMID: 36109670     DOI: 10.1038/s41556-022-00989-7

Source DB:  PubMed          Journal:  Nat Cell Biol        ISSN: 1465-7392            Impact factor:   28.213


  43 in total

Review 1.  Role of Kupffer cells in host defense and liver disease.

Authors:  Manfred Bilzer; Frigga Roggel; Alexander L Gerbes
Journal:  Liver Int       Date:  2006-12       Impact factor: 5.828

2.  Cholangiocytes act as facultative liver stem cells during impaired hepatocyte regeneration.

Authors:  Alexander Raven; Wei-Yu Lu; Tak Yung Man; Sofia Ferreira-Gonzalez; Eoghan O'Duibhir; Benjamin J Dwyer; John P Thomson; Richard R Meehan; Roman Bogorad; Victor Koteliansky; Yuri Kotelevtsev; Charles Ffrench-Constant; Luke Boulter; Stuart J Forbes
Journal:  Nature       Date:  2017-07-12       Impact factor: 49.962

3.  Mesenchymal origin of hepatic stellate cells, submesothelial cells, and perivascular mesenchymal cells during mouse liver development.

Authors:  Kinji Asahina; Shirley Y Tsai; Peng Li; Mamoru Ishii; Robert E Maxson; Henry M Sucov; Hidekazu Tsukamoto
Journal:  Hepatology       Date:  2009-03       Impact factor: 17.425

Review 4.  Liver sinusoidal endothelial cells: Physiology and role in liver diseases.

Authors:  Johanne Poisson; Sara Lemoinne; Chantal Boulanger; François Durand; Richard Moreau; Dominique Valla; Pierre-Emmanuel Rautou
Journal:  J Hepatol       Date:  2016-07-14       Impact factor: 25.083

5.  Regenerative medicine. Knocking on the door to successful hepatocyte transplantation.

Authors:  Stuart J Forbes; Malcolm R Alison
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2014-03-25       Impact factor: 46.802

6.  Functional and structural features of cholangiocytes in health and disease.

Authors:  Luca Maroni; Bai Haibo; Debolina Ray; Tianhao Zhou; Ying Wan; Fanyin Meng; Marco Marzioni; Gianfranco Alpini
Journal:  Cell Mol Gastroenterol Hepatol       Date:  2015-07-01

7.  Hepatic progenitor cells of biliary origin with liver repopulation capacity.

Authors:  Wei-Yu Lu; Thomas G Bird; Luke Boulter; Atsunori Tsuchiya; Alicia M Cole; Trevor Hay; Rachel V Guest; Davina Wojtacha; Tak Yung Man; Alison Mackinnon; Rachel A Ridgway; Timothy Kendall; Michael J Williams; Thomas Jamieson; Alex Raven; David C Hay; John P Iredale; Alan R Clarke; Owen J Sansom; Stuart J Forbes
Journal:  Nat Cell Biol       Date:  2015-07-20       Impact factor: 28.824

8.  Massively parallel digital transcriptional profiling of single cells.

Authors:  Grace X Y Zheng; Jessica M Terry; Phillip Belgrader; Paul Ryvkin; Zachary W Bent; Ryan Wilson; Solongo B Ziraldo; Tobias D Wheeler; Geoff P McDermott; Junjie Zhu; Mark T Gregory; Joe Shuga; Luz Montesclaros; Jason G Underwood; Donald A Masquelier; Stefanie Y Nishimura; Michael Schnall-Levin; Paul W Wyatt; Christopher M Hindson; Rajiv Bharadwaj; Alexander Wong; Kevin D Ness; Lan W Beppu; H Joachim Deeg; Christopher McFarland; Keith R Loeb; William J Valente; Nolan G Ericson; Emily A Stevens; Jerald P Radich; Tarjei S Mikkelsen; Benjamin J Hindson; Jason H Bielas
Journal:  Nat Commun       Date:  2017-01-16       Impact factor: 14.919

9.  Single cell analysis of human foetal liver captures the transcriptional profile of hepatobiliary hybrid progenitors.

Authors:  Joe M Segal; Deniz Kent; Daniel J Wesche; Soon Seng Ng; Maria Serra; Bénédicte Oulès; Gozde Kar; Guy Emerton; Samuel J I Blackford; Spyros Darmanis; Rosa Miquel; Tu Vinh Luong; Ryo Yamamoto; Andrew Bonham; Wayel Jassem; Nigel Heaton; Alessandra Vigilante; Aileen King; Rocio Sancho; Sarah Teichmann; Stephen R Quake; Hiromitsu Nakauchi; S Tamir Rashid
Journal:  Nat Commun       Date:  2019-07-26       Impact factor: 14.919

10.  Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations.

Authors:  Sonya A MacParland; Jeff C Liu; Xue-Zhong Ma; Brendan T Innes; Agata M Bartczak; Blair K Gage; Justin Manuel; Nicholas Khuu; Juan Echeverri; Ivan Linares; Rahul Gupta; Michael L Cheng; Lewis Y Liu; Damra Camat; Sai W Chung; Rebecca K Seliga; Zigong Shao; Elizabeth Lee; Shinichiro Ogawa; Mina Ogawa; Michael D Wilson; Jason E Fish; Markus Selzner; Anand Ghanekar; David Grant; Paul Greig; Gonzalo Sapisochin; Nazia Selzner; Neil Winegarden; Oyedele Adeyi; Gordon Keller; Gary D Bader; Ian D McGilvray
Journal:  Nat Commun       Date:  2018-10-22       Impact factor: 14.919

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