Literature DB >> 36107485

Neutrophil-mediated fibroblast-tumor cell il-6/stat-3 signaling underlies the association between neutrophil-to-lymphocyte ratio dynamics and chemotherapy response in localized pancreatic cancer: A hybrid clinical-preclinical study.

Iago de Castro Silva1, Anna Bianchi1, Nilesh U Deshpande1, Prateek Sharma1,2, Siddharth Mehra1, Vanessa Tonin Garrido1, Shannon Jacqueline Saigh3, Jonathan England4, Peter Joel Hosein3,5, Deukwoo Kwon6, Nipun B Merchant1,6, Jashodeep Datta1,6.   

Abstract

Background: Partial/complete pathologic response following neoadjuvant chemotherapy (NAC) in pancreatic cancer (PDAC) patients undergoing pancreatectomy is associated with improved survival. We sought to determine whether neutrophil-to-lymphocyte ratio (NLR) dynamics predict pathologic response following chemotherapy in PDAC, and if manipulating NLR impacts chemosensitivity in preclinical models and uncovers potential mechanistic underpinnings underlying these effects.
Methods: Pathologic response in PDAC patients (n=94) undergoing NAC and pancreatectomy (7/2015-12/2019) was dichotomized as partial/complete or poor/absent. Bootstrap-validated multivariable models assessed associations between pre-chemotherapy NLR (%neutrophils÷%lymphocytes) or NLR dynamics during chemotherapy (ΔNLR = pre-surgery-pre-chemotherapy NLR) and pathologic response, disease-free survival (DFS), and overall survival (OS). To preclinically model effects of NLR attenuation on chemosensitivity, Ptf1aCre/+; KrasLSL-G12D/+;Tgfbr2flox/flox (PKT) mice and C57BL/6 mice orthotopically injected with KrasLSL-G12D/+;Trp53LSL-R172H/+;Pdx1Cre(KPC) cells were randomized to vehicle, gemcitabine/paclitaxel alone, and NLR-attenuating anti-Ly6G with/without gemcitabine/paclitaxel treatment.
Results: In 94 PDAC patients undergoing NAC (median:4 months), pre-chemotherapy NLR (p<0.001) and ΔNLR attenuation during NAC (p=0.002) were independently associated with partial/complete pathologic response. An NLR score = pre-chemotherapy NLR+ΔNLR correlated with DFS (p=0.006) and OS (p=0.002). Upon preclinical modeling, combining NLR-attenuating anti-Ly6G treatment with gemcitabine/paclitaxel-compared with gemcitabine/paclitaxel or anti-Ly6G alone-not only significantly reduced tumor burden and metastatic outgrowth, but also augmented tumor-infiltrating CD107a+-degranulating CD8+ T-cells (p<0.01) while dampening inflammatory cancer-associated fibroblast (CAF) polarization (p=0.006) and chemoresistant IL-6/STAT-3 signaling in vivo. Neutrophil-derived IL-1β emerged as a novel mediator of stromal inflammation, inducing inflammatory CAF polarization and CAF-tumor cell IL-6/STAT-3 signaling in ex vivo co-cultures. Conclusions: Therapeutic strategies to mitigate neutrophil-CAF-tumor cell IL-1β/IL-6/STAT-3 signaling during NAC may improve pathologic responses and/or survival in PDAC. Funding: Supported by KL2 career development grant by Miami CTSI under NIH Award UL1TR002736, Stanley Glaser Foundation, American College of Surgeons Franklin Martin Career Development Award, and Association for Academic Surgery Joel J. Roslyn Faculty Award (to J. Datta); NIH R01 CA161976 (to N.B. Merchant); and NCI/NIH Award P30CA240139 (to J. Datta and N.B. Merchant).
© 2022, de Castro Silva et al.

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Keywords:  cancer associated fibroblasts; chemotherapy resistance; human; immunology; inflammation; medicine; mouse; myeloid-derived suppressor cells (MDSCs); neutrophils; pancreas cancer; surgery

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Year:  2022        PMID: 36107485      PMCID: PMC9512403          DOI: 10.7554/eLife.78921

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.713


Introduction

Modern multi-agent chemotherapy delivered in the neoadjuvant setting for localized pancreatic ductal adenocarcinoma (PDAC) is an increasingly popular treatment sequencing strategy (Datta and Merchant, 2021). Our group has previously reported that major pathologic response following neoadjuvant chemotherapy (NAC) is associated with improved overall survival (Macedo et al., 2019). A major unmet need that remains is the discovery of biomarkers of pathologic response as well as subsequent disease trajectories in patients who undergo resection following NAC. Neutrophil-to-lymphocyte ratio (NLR) has emerged as a promising biomarker in localized and advanced PDAC. Beyond its prognostic value in advanced unresectable disease (Iwai et al., 2020), recent evidence implicates the value of pre-surgery NLR in forecasting recurrence in patients undergoing upfront pancreatectomy (Nywening et al., 2018), as well as pre- and post-treatment NLR in predicting pathologic response following neoadjuvant chemoradiotherapy (Hasegawa et al., 2016; Kubo et al., 2019). However, the precise relationship between NLR dynamics during neoadjuvant treatment and pathologic response and/or survival in localized PDAC patients undergoing pancreatectomy has not been previously explored. Emerging evidence implicates stromal inflammation in the PDAC tumor microenvironment (TME)—predominantly through inflammatory polarization of cancer-associated fibroblasts (iCAF) and CAF-derived secretion of IL-6 (Öhlund et al., 2017)—as a major driver of chemoresistance in PDAC (Hosein et al., 2020). Furthermore, prior work from our group has revealed that CAF-derived IL-6 engages in tumor-permissive crosstalk by activating STAT3 signaling within tumor cells (Nagathihalli et al., 2016), and that heightened CAF-tumor cell IL-6/STAT-3 signaling crosstalk is a central mediator of chemoresistance in PDAC (Dosch et al., 2021). As such, how tumor-permissive inflammatory cues such as neutrophil-lymphocyte balance intersect with such signaling mechanisms underlying therapeutic resistance in PDAC remains critically underexplored. In a cohort of patients with operable PDAC undergoing modern multi-agent NAC, we sought to determine if NLR dynamics predict pathologic response following NAC in patients undergoing curative-intent pancreatectomy. We further investigated if pharmacologically modulating NLR dynamics in preclinical models of PDAC would impact chemosensitivity and uncover potential immunologic- and stromal-mediated mechanisms underlying these effects in vivo.

Materials and methods

Clinical analysis

Patients with localized PDAC who received NAC with either mFOLFIRINOX, gemcitabine/abraxane, or both and underwent pancreatectomy between July 2015 and December 2019 at a tertiary academic center (n=101) were enrolled. Patients were excluded if annotated pathologic response information was unavailable (n=5) or if they underwent R2 resection (n=2; Figure 1A; Appendix 1—table 1). Pathologic response (PR) in resected specimens was dichotomized as ‘partial/complete’ or ‘poor/absent’ response based on established College of American Pathologists guidelines (Washington et al., 2010). For each patient, the proportion of neutrophils and lymphocytes were obtained from complete blood counts accrued at two timepoints—pre-NAC and pre-surgery (for details, see Appendix). NLR was defined as %neutrophils÷%lymphocytes. Both the absolute NLR prior to initiation of NAC (pre-NAC aNLR) as well as dynamic changes in NLR during NAC, defined as ΔNLR (=pre-surgery aNLR minus pre-NAC aNLR; Park et al., 2020), were correlated with PR. Multivariable models assessed the independent association of aNLR and ΔNLR metrics (dichotomized into high vs. low) with partial/complete PR. Area under receiver-operating curves (AUCs) were estimated for three models (aNLR only, ΔNLR only, combined aNLR+ΔNLR), internally validated using bootstrap logistic regression, and an ‘NLR score’ comprising product of regression coefficients and aNLR/ΔNLR ( = 10.45–2.9224*aNLR - 2.13*ΔNLR) was generated to stratify disease-free (DFS) and overall survival (OS) via Kaplan-Meier estimates. All tests were two-sided and statistical significance designated as p≤0.05.
Figure 1.

Neutrophil-to-lymphocyte ratio (NLR) dynamics are associated with pathologic response and survival following neoadjuvant chemotherapy in pancreatic cancer.

(A) STROBE diagram for selection of study-eligible patients with potentially operable pancreatic ductal adenocarcinoma undergoing neoadjuvant chemotherapy and curative-intent pancreatectomy, stratified by pathologic response; (B) Comparison of pre-chemotherapy absolute NLR (aNLR) between resected PDAC patients who demonstrated partial/complete pathologic response (n=66) and poor/absent pathologic response (n=28) following neoadjuvant chemotherapy. Median (IQR) values are plotted; (C) Waterfall plot depicting the delta-NLR (ΔNLR = pre-surgery NLR—pre-chemotherapy NLR) of all study-eligible patients, stratified by partial/complete (blue) or poor/absent (red) pathologic response. Dotted lines indicate median ΔNLR in each cohort, and adjoining p-value represents the comparison of these median values; (D) Forest plot showing predictors of pathologic response following NAC in a multivariable logistic regression model. Adjusted log odds ratios (ORs) and corresponding 95% confidence intervals are plotted on the x-axis; (E) Stratification of disease-free survival (top) and overall survival (bottom) by ‘NLR score’, calculated as the product of regression coefficients and aNLR/ΔNLR. The NLR score was dichotomized at ≤0 or>0 based on its efficiency at prognosticating DFS and OS. Number of patients at risk at each time point shown in adjoining tables.

Appendix 1—table 1.

Clinicopathological characteristics of study-eligible patients with localized pancreatic ductal adenocarcinoma who received neoadjuvant chemotherapy (NAC) and underwent curative-intent pancreatectomy (BMI: body mass index; HRD: Homologous Recombination Deficiency; ECOG: Easter Cooperative Oncology Group; CAP: College of American Pathology; G-CSF: Granulocyte-colony stimulating factor).

VariableAll patients (n=94)Complete/ partial response to NAC (n=66)Absent/poor response to NAC(n=28)P-value
Age (mean ± SD)67.3±10.367.5±10.966.9±8.90.78
Female gender, n (%)58 (61.7 %)41 (62.1%)17 (60.7%)0.89
Diagnosis BMI, (mean ± SD)26.7±4.926.8±526.4±4.60.68
Hispanic Ethnicity, n (%)43 (45.8%)30 (45.5%)13 (46.4%)0.64
Germline HRD mutation, n (%)Germline HRD mutationNo germline HRD mutation6 (6.3%)88 (93.7%)6 (9.1%)60 (91.9%)0 (0%)28 (100%)0.17
Pre-chemotherapy Absolute Blood CountsTotal Leukocyte count (103 /μl)Neutrophil count (%)Lymphocyte count (%)Platelet count (103 /μl)7.2±1.665.3±7.322.3±7.0243±71.57.2±1.863.7±6.924.8±6.7246±69.57.25±1.569.7±4.117.6±3.5234±77.30.92<0.001<0.0010.59
Pre-chemotherapy Neutrophil/Lymphocyte Ratio (median ± SD)3.0±1.32.5±1.03.9±1.2 <0.001
Diagnosis CA 19–9 levels(median ± SD)181±1,823147±923202±2,9440.50
Pre-Surgery Absolute Blood CountsTotal Leukocyte count (103 /ul)Neutrophil count (%)Lymphocyte count (%)Platelet count (* 103 /ul)7±1.9263.2±9.523.6±7.7198±74.16.1±1.7260±7.826.5±6.4203±57.88.5±1.9571±6.2516.7±4.7181±104 0.01 <0.001 <0.001 0.03
Pre-Surgery Neutrophil/ Lymphocyte Ratio(median ± SD)2.6±1.572.3±0.784.2±1.68 <0.001
ΔNLR (=Pre-Surgery-Pre-Chemo NLR) (median ± SD)- 0.1±1.25- 0.38±1.10.21±1.5 0.01
ECOG Status, n (%)01236 (38.3%)49 (52.1%)9 (9.6%)27 (40.9%)34 (51.5%)5 (7.6%)9 (32.1%)15 (53.6%)4 (14.3%)0.51
Tumor locationHeadBodyTail76 (80.8%)9 (9.6%)9 (9.6%)53 (80.3%)6 (9.1%)7 (10.6%)23 (82.1%)3 (10.7%)2 (7.2%)0.96
Resectability statusResectableBorderline resectableLocally advanced21 (22.3%)50 (53.2%)23 (24.5%)15 (22.7%)36 (54.6%)15 (22.7%)6 (21.4%)14 (50.0%)8 (28.6%)0.83
Radiographic tumor size(median ± SD)30±14.230±10.728.5±20.20.19
Neoadjuvant ChemotherapyGemcitabine/AbraxaneFOLFIRINOXBoth35 (37.2%)49 (52.2%)10 (10.6%)26 (39.4%)33 (50.0%)7 (10.6%)9 (32.1%)16 (57.1%)3 (10.8%)0.79
Duration of NAC (months) * 4±2.34±2.24±2.60.22
Use of G-CSF during NAC 91 (96.8%)64 (97.0%)27 (96.4%)1.00
Neoadjuvant radiation 6 (6.4%)4 (6.1%)2 (7.1%)1.00
Histology gradeWell DifferentiatedModerately differentiatedPoorly differentiated2 (2.1%)59 (62.8%)27 (28.7%)2 (3%)49 (74.2%)11 (16.7%)0 (0%)10 (35.7%)16 (57.1%) 0.002
pT classificationT1T2T3T427 (28.7%)33 (35.1%)28 (29.8%)6 (6.4%)27 (40.9%)22 (33.3%)14 (21.3%)3 (4.5%)0 (0%)11 (39.3%)14 (50.0%)3 (10.7%) <0.001
pN classificationPositiveNegative52 (55.3%)42 (44.7%)32 (48.5%)34 (51.5%)20 (71.4%)8 (28.6%) 0.04
Pathological StageIAIBIIAIIBIIIIV17 (18.1%)12 (12.8%)10 (10.6%)47 (50%)7 (7.4%)1 (1.1%)17 (25.7%)9 (13.6%)6 (9.1%)30 (45.5%)4 (6.1%)0 (0%)0 (0%)3 (10.7%)4 (14.3%)17 (60.7%)3 (10.7%)1 (3.6%) 0.04
Neoadjuvant therapy response (CAP grading)Grade 0Grade 1Grade 2Grade 30 (0%)12 (12.8%)54 (57.4%)28 (29.8%)-12 (18.2%)54 (81.8%)-28 (100%)N/A
R0 resection marginYesNo (R1 resection)78 (83%)16 (17%)61 (92.4%)5 (7.6%)17 (60.7%)11 (39.3%) <0.001
Adjuvant therapy, n (%)58 (61.7%)43 (65.2%)15 (53.6%)0.29
Local RecurrenceYesNo19 (20.2%)75 (79.8 %)10 (15.2%)56 (84.8%)9 (32.1%)19 (67.8%)0.06
Distant RecurrenceYesNo55 (58.5%)39 (41.5%)34 (51.5%)32 (48.5%)21 (75%)7 (25%) 0.03

Due to variation in dose scheduling between FOLFIRINOX and gemcitabine/abraxane, duration of NAC is reported in months (vs. number of cycles).

Grade information missing in 6 patients.

College of American Pathologist (CAP) grading: Grade 0, no viable residual tumor (pathologic complete response); Grade 1, marked response (minimal residual cancer with single cells or small groups of cancer cells); Grade 2, partial response (residual cancer with evident tumor regression, but more than single cells or rare small groups of cancer cells); and Grade 3, poor or no response (extensive residual cancer with no evident tumor regression).

Neutrophil-to-lymphocyte ratio (NLR) dynamics are associated with pathologic response and survival following neoadjuvant chemotherapy in pancreatic cancer.

(A) STROBE diagram for selection of study-eligible patients with potentially operable pancreatic ductal adenocarcinoma undergoing neoadjuvant chemotherapy and curative-intent pancreatectomy, stratified by pathologic response; (B) Comparison of pre-chemotherapy absolute NLR (aNLR) between resected PDAC patients who demonstrated partial/complete pathologic response (n=66) and poor/absent pathologic response (n=28) following neoadjuvant chemotherapy. Median (IQR) values are plotted; (C) Waterfall plot depicting the delta-NLR (ΔNLR = pre-surgery NLR—pre-chemotherapy NLR) of all study-eligible patients, stratified by partial/complete (blue) or poor/absent (red) pathologic response. Dotted lines indicate median ΔNLR in each cohort, and adjoining p-value represents the comparison of these median values; (D) Forest plot showing predictors of pathologic response following NAC in a multivariable logistic regression model. Adjusted log odds ratios (ORs) and corresponding 95% confidence intervals are plotted on the x-axis; (E) Stratification of disease-free survival (top) and overall survival (bottom) by ‘NLR score’, calculated as the product of regression coefficients and aNLR/ΔNLR. The NLR score was dichotomized at ≤0 or>0 based on its efficiency at prognosticating DFS and OS. Number of patients at risk at each time point shown in adjoining tables.

In vivo experiments

To recapitulate systemic NLR attenuation in preclinical models of PDAC, C57BL/6 mice orthotopically injected with 50x103 syngeneic Kras PDAC cells (KPC6694c2, provided by Ben Stanger/UPenn, mycoplasma negative) were treated with increasing doses of neutralizing anti-Ly6G antibody (BioXcell; 25 μg, 100 μg, 200 μg) to attenuate—but not deplete—circulating Ly6G+:CD3+ ratios for further experiments. C57BL/6 mice were then orthotopically injected with 50x103 KPC6694c2 (henceforth KPC) cells and randomized into four groups starting 10 days after tumor inoculation (n=8–10/arm): vehicle control, NLR-attenuating anti-Ly6G alone (25 μg/dose) q3 days starting day 10, gemcitabine (100 mg/kg) and paclitaxel (10 mg/kg) once weekly starting day 14, and gemcitabine/paclitaxel treatment (day 14) following a ‘priming’ phase of anti-Ly6G attenuation starting day 10 (for details, see Appendix). Mice were sacrificed following 3 weeks of treatment, tumor burden and metastatic outgrowth evaluated, and tumor samples subjected to histological analysis, immunohistochemistry (Ly6G/Gr1, phosphorylated STAT3, cleaved caspase-1, and CD31), flow cytometric CAF and immune phenotyping, and enzyme-linked immunosorbent assay (ELISA; IL-6 and IL-1β; Park et al., 2020). A similar series of experiments were performed in Ptf1a (PKT) genetically engineered mice (Datta et al., 2022) to validate observations from the orthotopic KPC model (for details, see Appendix).

Imaging mass cytometry (IMC) in human PDAC tumors

We retrieved FFPE blocks of 6 pre-treatment PDAC specimens from localized PDAC patients who underwent neoadjuvant chemotherapy and surgical resection, and stratified these post-hoc into partial/complete (n=3) or poor/absent (n=3) pathologic response. For detailed clinical annotation of these specimens, see Appendix 1—table 2. A board-certified GI pathologist selected regions of interest (ROI) from each slide comprising tumor cells, fibroblasts, and immune cells by correlating with corresponding H&E-stained sections. This slide was stained with an IMC panel of 10 metal-conjugated antibodies and a cell intercalator (Appendix). Prior to acquisition, Hyperion mass cytometry system (Fluidigm) was autotuned using a 3-element tuning slide and detection threshold of >700 mean duals of 175Lu was used according to manufacturer protocol. ROIs (1.8–3 mm2) were ablated and acquired at 200 Hz. Data were exported as MCD files and analyzed for single-cell segmentation analysis using Visiopharm software. For details, refer to Appendix.
Appendix 1—table 2.

Salient clinical characteristics and single-cell image segmentation details from imaging mass cytometry experiments comparing tissue-level neutrophil-to-lymphocyte ratio (NLR) and stromal α-SMA pixel intensity in pre-chemotherapy tissue sections from localized pancreatic ductal adenocarcinoma (PDAC) patients who demonstrated either partial/complete or poor/absent pathologic response to neoadjuvant chemotherapy.

Pt #Primary tumorNAC regimenDuration of NAC (mo)Neoadjuvant radiationPathologic response# total single cells in IMC slide#CD11b+CD15+ neutrophils#CD3+CD8+ T cellsNLR (norm. to 5000 cells)
1Borderline ResectableFFX4NoPartial(CAP 2)43263252911.2
2Borderline ResectableFFX4.5NoPartial(CAP 2)3256256327.9
3Locally Advanced*GNP6NoNear-complete (CAP 1)94214721423.3
4Borderline ResectableGNP5NoPoor/Absent(CAP 3)86219516115.6
5Locally Advanced*FFX6NoPoor/Absent(CAP 3)601111055918.7
6ResectableFFX +GNP6NoPoor/Absent(CAP 3)47125234013.1

Representative tissue and image segmentation maps depicted in Figure 4.

Ex vivo co-culture experiments

Tumor-infiltrating Ly6G+F4/80- neutrophils from orthotopic KPC tumor-bearing mice were isolated from fresh tumor suspensions using the Myeloid Derived Suppressor Cell Isolation Kit and QuadroMACS Separator (Miltenyi Biotech), and: (1) subjected to multiplex cytokine arrays using Proteome Profiler Mouse Cytokine Array Kit (R&D Systems, Minneapolis, MN); and (2) co-cultured with KPC CAFs with or without concurrent treatment with anti-IL-1β neutralizing antibody (Thermofisher, Waltham, MA) and IL-1R1 inhibitor Anakinra (SOBI Pharmaceuticals, Sweden). KPC tumor cells were incubated with conditioned media harvested from ex vivo co-cultures of intratumoral neutrophils and CAFs, either alone or with anti-IL-1β or anti-IL-6 neutralizing antibodies (Thermofisher, Waltham, MA), and ensuing protein lysates blotted for phosphorylated STAT-3 (pSTAT3). For complete details of all preclinical, in vivo, and in vitro experiments, see Appendix.

Results

NLR dynamics during NAC as biomarker of pathologic response and survival

Of 94 eligible patients (mean age 67, 58% female, 6% with germline homologous recombination deficiency genotype [BRCA2, n=5; PALB2, n=1]), 78% had borderline resectable or locally advanced disease. Patients received a median of 4 months of NAC (range 2–14), 52% received mFOLFIRINOX, and a minority of patients (6%) received neoadjuvant radiotherapy. Following NAC, partial/complete PR was achieved in 70% (66/94) while 28 patients (30%) demonstrated poor/absent PR (Appendix 1—table 1). Median pre-NAC aNLR was significantly lower in patients with partial/complete PR compared with poor/absent PR (2.53 vs 3.97; p<0.001) (Figure 1B). Moreover, a net attenuation in ΔNLR was observed in patients demonstrating partial/complete PR compared with a net increase in ΔNLR in poor/absent PR (median –0.38 vs. +0.21; p=0.01 respectively; Figure 1C). Of note, median aNLR or ΔNLR did not differ significantly between patients who received neoadjuvant mFOLFIRINOX vs. gemcitabine/nab-paclitaxel (3.00 vs 3.09, p=0.47; –0.02 to –0.25, p=0.16). On multivariable modeling, higher aNLR (OR 0.02, 95% CI 0.003–0.15; p<0.001 [Ref: low aNLR]), higher ΔNLR (OR 0.06, 95% CI 0.01–0.33; p=0.002 [Ref: low ΔNLR]), and any %decline in CA19-9 during NAC (OR 1.82, 95% CI 0.001–3.74; p=0.05 [Ref: any %increase in CA19-9])—but not NAC duration, BMI, resectability status, or use of neoadjuvant radiotherapy—were independent predictors of achieving partial/complete PR following NAC (Figure 1D, Appendix 1—table 3). Bootstrap-validated AUC-derived analysis revealed that a combined NLR model encompassing both aNLR and ΔNLR most efficiently predicted PR with an AUC of 0.96 (Appendix 1—figure 1). This combined NLR model also effectively estimated bootstrap-validated time-dependent AUC for both DFS (2 year: 0.61, 95% CI 0.56–0.65) and OS (2 year: 0.60, 95% CI 0.55–0.67) in this cohort (Appendix 1—figure 2A–C).
Appendix 1—table 3.

Predictors of partial/complete pathologic response following neoadjuvant chemotherapy in resected patients with localized pancreatic ductal adenocarcinoma using multivariable logistic regression.

VariableOR (95% CI)P-value
Age 1.02 (0.92, 1.09)0.68
GenderFemaleMaleRef2.86 (0.45, 26.2)-0.34
Diagnosis BMI 0.88 (0.74, 1.08)0.21
CA 19–9 dynamicsAny increaseAny decreaseRef1.82 (0.001, 3.74)-0.05
Resectability StatusBorderlineLocally advancedResectableRef2.72 (0.22, 33.2)0.64 (0.06, 7.44)-0.430.72
Radiographic tumor size 0.98 (0.91, 1.05)0.54
NAC duration (months)1.09 (0.68, 1.75)0.73
Absolute pre-chemotherapy aNLRLowHighRef0.02 (0.003, 0.15) <0.001
ΔNLRLowHighRef0.06 (0.01, 0.33) 0.002
Appendix 1—figure 1.

NLR dynamics during neoadjuvant chemotherapy (NAC) are associated with pathologic response in patients undergoing resection for pancreatic cancer.

Area under the receiver operating characteristic curve (AUC) statistics estimating the predictive capacity of three biomarker models (pre-chemotherapy aNLR only, ΔNLR only, combined model aNLR + ΔNLR) for pathologic response, internally validated with bootstrap logistic regression.

Appendix 1—figure 2.

NLR dynamics during neoadjuvant chemotherapy (NAC) are associated with survival in patients undergoing resection for pancreatic cancer.

Time-dependent AUC analysis with internal bootstrap validation examining the three biomarker models for (A) disease-free survival (DFS; left) and (B) overall survival (OS; left) for years 1–3. Corresponding time-specific receiver operating characteristic curves for 1 year and 2 years for both DFS and OS are shown (right); (C) Table showing reported mean AUC along with 95% confidence intervals for the three predictive biomarker models at 1 year and 2 years for DFS and OS.

At a median follow-up of 30 (IQR 7–49) months, 2 year and 5 year survival in this selected cohort of patients undergoing resection were 59% and 34%, respectively. An NLR score comprising the product of regression coefficients and aNLR/ΔNLR dichotomized at <0 and≥0 provided strongest discrimination of DFS and OS. Patients with an NLR score ≤0 demonstrated improved DFS (median 1.4 vs 0.7 years; p=0.006) and OS (median 3.6 vs 2.1 years; p=0.002) compared with patients with an NLR score >0 (Figure 1E).

Attenuation of NLR potentiates chemosensitivity in murine PDAC

To model NLR attenuation in preclinical models of PDAC, treatment of orthotopic KPC tumor-bearing mice with neutrophil-attenuating 25 μg anti-Ly6G dosing achieved approximately 50% attenuation in circulating Ly6G+:CD3+ NLR ratio compared with vehicle treatment (Appendix 1—figure 3A); treatment with gemcitabine/paclitaxel, however, did not significantly decrease Ly6G+:CD3+ ratios (Appendix 1—figure 3B). While gemcitabine/paclitaxel treatment expectedly decreased PDAC tumor size compared with vehicle and anti-Ly6G alone treatments, concurrent treatment of tumor-bearing mice with gemcitabine/paclitaxel +anti-Ly6G further significantly decreased pancreatic tumor weight (Figure 2A) and metastatic outgrowth, graded by the presence of tumor deposits at six extra-pancreatic sites (Figure 2B). Importantly, mice treated with combination gemcitabine/paclitaxel +anti-Ly6G treatment did not incur additional systemic toxicity during treatment as measured by mouse weights (Appendix 1—figure 4A) and systemic ALT levels (Appendix 1—figure 4B).
Appendix 1—figure 3.

Titration of non-depleting NLR attenuating anti-Ly6G antibody dosing in a preclinical model of PDAC.

(A) Representative flow cytometry contour plots depicting circulating splenocyte-derived Ly6G+ (top) and CD3+ (bottom) cell populations 2 weeks following anti-Ly6G dose titration experiment to identify NLR attenuating—but not depleting—dose. Histograms represent ratio of Ly6G+:CD3+ cells across different treatment arms (n=3 mice each). Based on these studies, we selected 25 µg dose because it reduced NLR by 50%; (B) Histogram representing Ly6G+:CD3+ ratio in vehicle treatment vs. gemcitabine/paclitaxel treatment to demonstrate the effect on circulating NLR with chemotherapy treatment in our murine model (n=8–10 mice per group).

Figure 2.

Attenuating neutrophil-to-lymphocyte ratio (NLR) improves sensitivity to chemotherapy in preclinical models of pancreatic cancer.

(A) Schematic of in vivo experimental design, illustrating treatment groups utilized (vehicle, anti-Ly6G [αLy6G] alone, gemcitabine/paclitaxel alone, and gemcitabine/paclitaxel+αLy6G), treatment timing, and schedules/regimens in KPC orthotopic model (top). Representative images (n=5 biologic replicates) from primary pancreatic tumors at endpoint analysis in each treatment group and adjoining histogram demonstrating differences in whole pancreas weights between treatment groups (n=8–10 mice/arm) at sacrifice are depicted (bottom); (B) Metastatic outgrowth in KPC orthotopic models of PDAC is graded by presence of tumor deposits at six extra-pancreatic sites; a representative example from a vehicle-treated mouse in these experiments is shown. Adjoining histogram depicts comparison of the frequency of extra-pancreatic metastatic involvement (values 1 through 6 for each mouse) across treatment groups (n=8–10 mice/group); (C) Representative images of tumor sections from each treatment group stained by H&E to demonstrate tumor area (all 20 x; scale bar = 50 μm), with high-magnification insets (40 x) indicating relevant areas on these representative sections. Slides from each treatment group were blinded, and %tumor area quantified by a board-certified pathologist (n=5 from each treatment group). This comparison is depicted in adjoining histogram; (D) Representative images of tumor sections stained for cleaved caspase-3 (CC-3) and CD31 from each treatment group (n=5; all 20 x; scale bar = 200 μm). Dotted circles and arrows represent areas of positive staining. Adjoining histograms show quantification of cleaved caspase-3 and CD31 staining across treatment groups (n=5 mice/group); (E) Representative images from primary pancreatic tumors at endpoint analysis in indicated treatment groups in the Ptf1a (PKT) genetically engineered mouse (GEM) model. Adjoining histogram shows differences in whole pancreas weights between treatment groups (n=5 mice/arm) at sacrifice; (F) Representative images of tumor sections from indicated treatment groups in PKT GEM experiments stained by H&E to demonstrate tumor area (all 20 x, error bar = 20 μm), with comparisons between groups depicted in adjoining histogram. Arrows in the Gem/Pac+αLy6G group show non-malignant epithelial structures. All in vivo experiments were repeated once for reproducibility, and all data points represent biologic replicates. All between-group statistics represent multiple comparison testing using Tukey’s post-hoc instrument in one-way ANOVA.

Appendix 1—figure 4.

NLR attenuation with or without systemic chemotherapy in preclinical models of PDAC does not increase treatment-related toxicity.

(A) Mean (± standard deviation) body weights, and (B) mean ± SD of alanine transferase (ALT) levels from blood of mice in each cohort (n=8–10/group) graphed at 3 time points based on treatment initiation and sacrifice, to assess treatment-related toxicity; ns: not significant.

Attenuating neutrophil-to-lymphocyte ratio (NLR) improves sensitivity to chemotherapy in preclinical models of pancreatic cancer.

(A) Schematic of in vivo experimental design, illustrating treatment groups utilized (vehicle, anti-Ly6G [αLy6G] alone, gemcitabine/paclitaxel alone, and gemcitabine/paclitaxel+αLy6G), treatment timing, and schedules/regimens in KPC orthotopic model (top). Representative images (n=5 biologic replicates) from primary pancreatic tumors at endpoint analysis in each treatment group and adjoining histogram demonstrating differences in whole pancreas weights between treatment groups (n=8–10 mice/arm) at sacrifice are depicted (bottom); (B) Metastatic outgrowth in KPC orthotopic models of PDAC is graded by presence of tumor deposits at six extra-pancreatic sites; a representative example from a vehicle-treated mouse in these experiments is shown. Adjoining histogram depicts comparison of the frequency of extra-pancreatic metastatic involvement (values 1 through 6 for each mouse) across treatment groups (n=8–10 mice/group); (C) Representative images of tumor sections from each treatment group stained by H&E to demonstrate tumor area (all 20 x; scale bar = 50 μm), with high-magnification insets (40 x) indicating relevant areas on these representative sections. Slides from each treatment group were blinded, and %tumor area quantified by a board-certified pathologist (n=5 from each treatment group). This comparison is depicted in adjoining histogram; (D) Representative images of tumor sections stained for cleaved caspase-3 (CC-3) and CD31 from each treatment group (n=5; all 20 x; scale bar = 200 μm). Dotted circles and arrows represent areas of positive staining. Adjoining histograms show quantification of cleaved caspase-3 and CD31 staining across treatment groups (n=5 mice/group); (E) Representative images from primary pancreatic tumors at endpoint analysis in indicated treatment groups in the Ptf1a (PKT) genetically engineered mouse (GEM) model. Adjoining histogram shows differences in whole pancreas weights between treatment groups (n=5 mice/arm) at sacrifice; (F) Representative images of tumor sections from indicated treatment groups in PKT GEM experiments stained by H&E to demonstrate tumor area (all 20 x, error bar = 20 μm), with comparisons between groups depicted in adjoining histogram. Arrows in the Gem/Pac+αLy6G group show non-malignant epithelial structures. All in vivo experiments were repeated once for reproducibility, and all data points represent biologic replicates. All between-group statistics represent multiple comparison testing using Tukey’s post-hoc instrument in one-way ANOVA. Compared with gemcitabine/paclitaxel alone, NLR attenuation with anti-Ly6G improved chemosensitivity as evidenced by significantly decreased tumor area by H&E staining (p=0.01; Figure 2C) as well as increased cleaved caspase-3 and microvessel (CD31) density (Figure 2D) in gemcitabine/paclitaxel +anti-Ly6G treated mice compared with all other treatment groups. To validate these observations in a spontaneous PDAC mouse model, we treated 4-week-old PKT mice with vehicle, gemcitabine/paclitaxel alone, and gemcitabine/paclitaxel plus anti-Ly6G combinations for 2 weeks. In this model as well, NLR attenuation with anti-Ly6G improved chemosensitivity vs. chemotherapy alone as evidenced by decreased primary tumor weights (p=004; Figure 2E) and tumor area by H&E staining (P=0.008; Figure 2F) at endpoint analysis.

NLR attenuation during chemotherapy promotes anti-tumor adaptive immunity

In tumor-bearing animals, NLR attenuation significantly reduced—but did not abolish—circulating Ly6G+Ly6CdimF4/80- neutrophilic cells, although a compensatory increase in Ly6ChiLy6G-F4/80- monocytic cells was observed via flow cytometry from splenocyte-derived CD11b+ cells (Figure 3A). As expected, NLR attenuation—either alone or in combination with gemcitabine/paclitaxel—significantly decreased tumor-infiltrating Ly6G/Gr1+ neutrophilic myeloid derived suppressor cells in the PDAC TME (Figure 3B). Flow cytometric analysis revealed that treatment with gemcitabine/paclitaxel +anti-Ly6G significantly increased infiltration of both intratumoral CD4+ and CD8+ T-cells, as well as augmented antigen experience (PD-1+) and degranulating capacity (CD107a+) specifically in the CD8+ T-cell compartment (Figure 3C), compared with gemcitabine/paclitaxel alone, anti-Ly6G alone, or vehicle arms. Interestingly, increased infiltration in both CD4+ and CD8+ central memory (CD44+CD62L+CD103-), but not effector (CD44+CD62L-) or tissue-resident memory (CD44+CD62L-CD103+), T-cells were observed in gemcitabine/paclitaxel +anti-Ly6G-treated tumors compared with gemcitabine/paclitaxel alone, anti-Ly6G alone, or vehicle-treated tumors (Figure 3D).
Figure 3.

Improved chemosensitivity following neutrophil attenuation in pancreatic cancer is associated with anti-tumor adaptive immunity.

(A) viSNE maps depicting comparison of splenocyte-derived circulating Ly6G+ (left) and Ly6C+ (right) MDSCs gated within Cd11b+F4/80 cells in NLR-attenuating anti-Ly6G (25 μg) vs. vehicle-treated KPC orthotopic tumor-bearing mice (n=3 mice/arm). Asterisks representing p-values denoting comparisons between anti-Ly6G and vehicle treatment are indicated in the top right left of graph, and quantified in the adjacent histogram; (B) Representative images from orthotopic KPC tumor sections in each treatment group stained for Ly6G/Gr1 (all 20 x; scale bar = 200 μm). Ly6G/Gr1+ cells per field are quantified and depicted in the adjacent histogram. High-magnification insets (40 x) indicate relevant areas on these representative sections; (C) viSNE maps of total intratumoral CD4+ and CD8+ T-cells gated within CD45+/CD11b-/CD3+ T cells across treatment groups (top), and viSNE maps of PD-1+ and CD107a+ in total CD45+/CD11b-/CD3+ T-cells, stratified by CD4+ (black dotted outline) and CD8+ (grey dotted outline) T-cells by flow cytometry across treatment groups (bottom; n=8–10 mice/group). Asterisks representing p-values denoting comparisons between each treatment group and vehicle treatment are indicated in the bottom left of graph. Post-hoc Tukey analysis from one-way ANOVA comparisons between treatment groups for each cell subset are shown in adjoining histograms; (D) Violin plots depicting the number of intratumoral effector memory (CD44+CD62L-), central memory (CD44+CD62L+CD103-), and tissue-resident memory (CD44+CD62L-CD103+) cells in CD4+ (left) and CD8+ (right) T-cell compartments across the four treatment arms (n=8–10 mice/group). All experiments were repeated once for reproducibility, and all data points represent biologic replicates; *, p<0.05; **, p<0.01; ***, p<0.001.

Improved chemosensitivity following neutrophil attenuation in pancreatic cancer is associated with anti-tumor adaptive immunity.

(A) viSNE maps depicting comparison of splenocyte-derived circulating Ly6G+ (left) and Ly6C+ (right) MDSCs gated within Cd11b+F4/80 cells in NLR-attenuating anti-Ly6G (25 μg) vs. vehicle-treated KPC orthotopic tumor-bearing mice (n=3 mice/arm). Asterisks representing p-values denoting comparisons between anti-Ly6G and vehicle treatment are indicated in the top right left of graph, and quantified in the adjacent histogram; (B) Representative images from orthotopic KPC tumor sections in each treatment group stained for Ly6G/Gr1 (all 20 x; scale bar = 200 μm). Ly6G/Gr1+ cells per field are quantified and depicted in the adjacent histogram. High-magnification insets (40 x) indicate relevant areas on these representative sections; (C) viSNE maps of total intratumoral CD4+ and CD8+ T-cells gated within CD45+/CD11b-/CD3+ T cells across treatment groups (top), and viSNE maps of PD-1+ and CD107a+ in total CD45+/CD11b-/CD3+ T-cells, stratified by CD4+ (black dotted outline) and CD8+ (grey dotted outline) T-cells by flow cytometry across treatment groups (bottom; n=8–10 mice/group). Asterisks representing p-values denoting comparisons between each treatment group and vehicle treatment are indicated in the bottom left of graph. Post-hoc Tukey analysis from one-way ANOVA comparisons between treatment groups for each cell subset are shown in adjoining histograms; (D) Violin plots depicting the number of intratumoral effector memory (CD44+CD62L-), central memory (CD44+CD62L+CD103-), and tissue-resident memory (CD44+CD62L-CD103+) cells in CD4+ (left) and CD8+ (right) T-cell compartments across the four treatment arms (n=8–10 mice/group). All experiments were repeated once for reproducibility, and all data points represent biologic replicates; *, p<0.05; **, p<0.01; ***, p<0.001.

NLR attenuation during chemotherapy reprograms inflammatory CAF polarization in the PDAC TME

Prior work from our group and others have revealed that inflammatory CAF (iCAF)-derived IL-6 engages in tumor-permissive crosstalk by activating STAT3 signaling with tumor cells (Nagathihalli et al., 2016), and that the CAF-tumor cell IL-6/STAT-3 signaling axis is a central mediator of chemoresistance in PDAC (Hosein et al., 2020; Dosch et al., 2021). Therefore, we investigated if NLR attenuation during chemotherapy improves chemosensitivity by reprogramming iCAF skewness and dampening IL-6/STAT-3 signaling in the TME. Compared with vehicle treatment, concurrent treatment with gemcitabine/paclitaxel +anti-Ly6G (P=0.006)—but not anti-Ly6G alone (p=0.12) or gemcitabine/paclitaxel alone (p=0.49) treatment—significantly reduced iCAF (CD45-CD31-PDPN+Ly6C+ MHCII-):myofibroblastic CAF (myCAF; CD45-CD31-PDPN+Ly6C-MHCII-) cellular ratios in vivo (Figure 4A; Appendix 1—figure 5A). Furthermore, leveraging the near-exclusive expression of PDPN/Pdpn in human and murine PDAC-associated CAFs via scRNAseq (Datta et al., 2022; Steele et al., 2020) (5B&C) and widespread use of PDPN as a pan-CAF marker in multiple PDAC-related studies (Dominguez et al., 2020; Steele et al., 2021; Elyada et al., 2019; Biffi et al., 2019; Neuzillet et al., 2019), we observed significant reduction in co-expressing PDPN+CXCL1+ stromal cells—presumed iCAFs—in tumors from PKT genetically engineered mice treated with gemcitabine/paclitaxel +anti-Ly6G compared with gemcitabine/paclitaxel alone (p=0.02; Figure 4B), validating findings from the KPC orthotopic model.
Figure 4.

Improved chemosensitivity with attenuated NLR is associated with reduction in inflammatory CAF abundance and IL-6/STAT-3 signaling in the tumor microenvironment.

(A) Representative contour plots of CD45-CD31-PDPN+ cancer-associated fibroblasts (CAF) gated on Ly6C and MHC-II across vehicle, NLR-attenuating αLy6G, gemcitabine plus paclitaxel (Gem/Pac) alone, and Gem/Pac+ αLy6G treatment groups in orthotopic KPC tumor-bearing mice (n=8–10 mice/group) based on percentages of parental cell populations. Inflammatory (iCAF: Ly6C+MHC-II-), myofibroblastic (myCAF: Ly6C-MHC-II-) and antigen-presenting (apCAF: Ly6C-MHC-II+) sub-populations are indicated in their respective quadrants. Relative ratios of iCAF/myCAF subsets are quantified in adjacent box-and-whisker plots across treatment groups; (B) Immunofluorescent staining for Pdpn (marking CAF), Cxcl1, and merged images (all 20 x; scale bar = 20 μm) from representative tumor sections in PKT mice treated with vehicle, Gem/Pac and Gem/Pac + αLy6G (n=5 mice/arm). Arrows indicate regions with co-localized stromal Pdpn and Cxcl1 staining, with adjacent histogram quantifying % area per section from each biologic replicate with co-localized stromal Pdpn and Cxcl1 staining; (C) Schematic representation of imaging mass cytometry (IMC) workflow to provide spatially resolved single-cell phenotypes of human PDAC tumors derived from pre-treatment specimens which underwent neoadjuvant chemotherapy and ultimately demonstrated partial/complete or poor/absent pathologic response (n=3 each); (D) Single-cell segmentation of CD11b+CD15+ neutrophils and CD3+CD8+ T-cells mapped onto representative tissue section from tumors showing poor/absent and partial/complete response, with epithelial (PanCK) and stromal (α-SMA) territories also shown. Adjacent violin plot (top) quantifies tissue-level neutrophil-to-lymphocyte (NLR) across three tumors in each group, calculated as #CD11b+CD15+÷ #CD3+CD8+ cells (normalized to 5000 total single cells), while histogram (bottom) tabulates mean pixel intensity of α-SMA expression in stromal cells across three tumors each in partial/complete vs. poor/absent responder cohorts; (E) Immunofluorescent staining for PDPN (marking CAF), CXCL1, and merged images (all 20 x) in representative sections from the same tumors shown in (D) stratified by poor/absent vs. partial/complete response. White arrows indicate regions with co-localized stromal PDPN and CXCL1 staining, with adjacent histogram quantifying % area with co-localized stromal PDPN and CXCL1 staining. For the latter comparison, three separate sections from each biologic replicate (n=9 total sections) were used for latter comparison; (F) Quantification of IL-6 ELISA (pg/ml) from whole tumor protein lysates across vehicle, αLy6G-treated, gemcitabine +paclitaxel (Gem/Pac) alone-treated, and Gem/Pac+αLy6G-treated orthotopic KPC tumor-bearing mice (n=8–10 mice/group); (G) Representative images from tumor sections in each treatment group (n=5 mice/group) stained for phospoSTAT3 (all 20 x; scale bar = 200 μm), and adjacent bar graph showing quantification of % positive area of pSTAT3 in the epithelial compartment per field. All between-group statistics represent multiple comparison testing using Tukey’s post-hoc instrument in one-way ANOVA. When absolute p-values not provided: *, p<0.05; **, p<0.01.

Appendix 1—figure 5.

PDPN is a marker of pancreatic tumor-associated cancer associated fibroblasts (CAF).

(A) Gating strategy for flow cytometric analysis of PDPN+ CAF populations after exclusion of CD45+, EpCAM+, and CD31+ cells; (B) Dot plot from single cell RNA sequencing (scRNAseq) dataset [reference 13] showing near-exclusive expression of Pdpn in CAF subcluster nominated by Col1a1 and Col1a2 expression; (C) scRNAseq data from human PDAC patients [reference 14] showing near-exclusive expression of PDPN in tumor-associated fibroblast clusters. In (B) and (C), expression density and percent expression in respective sub-cluster is indicated in adjoining legends.

Improved chemosensitivity with attenuated NLR is associated with reduction in inflammatory CAF abundance and IL-6/STAT-3 signaling in the tumor microenvironment.

(A) Representative contour plots of CD45-CD31-PDPN+ cancer-associated fibroblasts (CAF) gated on Ly6C and MHC-II across vehicle, NLR-attenuating αLy6G, gemcitabine plus paclitaxel (Gem/Pac) alone, and Gem/Pac+ αLy6G treatment groups in orthotopic KPC tumor-bearing mice (n=8–10 mice/group) based on percentages of parental cell populations. Inflammatory (iCAF: Ly6C+MHC-II-), myofibroblastic (myCAF: Ly6C-MHC-II-) and antigen-presenting (apCAF: Ly6C-MHC-II+) sub-populations are indicated in their respective quadrants. Relative ratios of iCAF/myCAF subsets are quantified in adjacent box-and-whisker plots across treatment groups; (B) Immunofluorescent staining for Pdpn (marking CAF), Cxcl1, and merged images (all 20 x; scale bar = 20 μm) from representative tumor sections in PKT mice treated with vehicle, Gem/Pac and Gem/Pac + αLy6G (n=5 mice/arm). Arrows indicate regions with co-localized stromal Pdpn and Cxcl1 staining, with adjacent histogram quantifying % area per section from each biologic replicate with co-localized stromal Pdpn and Cxcl1 staining; (C) Schematic representation of imaging mass cytometry (IMC) workflow to provide spatially resolved single-cell phenotypes of human PDAC tumors derived from pre-treatment specimens which underwent neoadjuvant chemotherapy and ultimately demonstrated partial/complete or poor/absent pathologic response (n=3 each); (D) Single-cell segmentation of CD11b+CD15+ neutrophils and CD3+CD8+ T-cells mapped onto representative tissue section from tumors showing poor/absent and partial/complete response, with epithelial (PanCK) and stromal (α-SMA) territories also shown. Adjacent violin plot (top) quantifies tissue-level neutrophil-to-lymphocyte (NLR) across three tumors in each group, calculated as #CD11b+CD15+÷ #CD3+CD8+ cells (normalized to 5000 total single cells), while histogram (bottom) tabulates mean pixel intensity of α-SMA expression in stromal cells across three tumors each in partial/complete vs. poor/absent responder cohorts; (E) Immunofluorescent staining for PDPN (marking CAF), CXCL1, and merged images (all 20 x) in representative sections from the same tumors shown in (D) stratified by poor/absent vs. partial/complete response. White arrows indicate regions with co-localized stromal PDPN and CXCL1 staining, with adjacent histogram quantifying % area with co-localized stromal PDPN and CXCL1 staining. For the latter comparison, three separate sections from each biologic replicate (n=9 total sections) were used for latter comparison; (F) Quantification of IL-6 ELISA (pg/ml) from whole tumor protein lysates across vehicle, αLy6G-treated, gemcitabine +paclitaxel (Gem/Pac) alone-treated, and Gem/Pac+αLy6G-treated orthotopic KPC tumor-bearing mice (n=8–10 mice/group); (G) Representative images from tumor sections in each treatment group (n=5 mice/group) stained for phospoSTAT3 (all 20 x; scale bar = 200 μm), and adjacent bar graph showing quantification of % positive area of pSTAT3 in the epithelial compartment per field. All between-group statistics represent multiple comparison testing using Tukey’s post-hoc instrument in one-way ANOVA. When absolute p-values not provided: *, p<0.05; **, p<0.01.

Reduced tissue-level NLR correlates with chemotherapy response, CAF density, and stromal inflammation at single-cell resolution in human PDAC

To examine the association between tissue-level NLR, stromal density/inflammation, and chemotherapy response (partial/complete [n=3], poor/absent [n=3]) in human PDAC tumors (Appendix 1—table 2) at single-cell resolution, pathologist-selected regions of interest (ROI) from each tumor section probed with metal ion-conjugated antibodies for pancytokeratin (PanCK:epithelial), α-smooth muscle actin (α-SMA:fibroblast), CD11b and CD15 (neutrophil), and CD3 and CD8 (T-cell) were laser-ablated, and atomized ions were acquired using time-of-flight mass cytometry (cyTOF) (Figure 4C). Image segmentation and quantification revealed significantly higher ratio of CD11b+CD15+ to CD3+CD8+ cells (NLR; normalized to 5000 total single cells) in pre-treatment tumors from PDAC patients who demonstrated poor/absent pathologic response compared with partial/complete response (15.8±2.8 vs 7.4±3.9; p=0.039) following neoadjuvant chemotherapy (Figure 4D). Interestingly, increased NLR in patients with poor/absent pathologic response correlated with significantly higher mean intensity of α-SMA expression (41.9±26.6 vs 18.4±16.6 pixels/cell; p<0.001) in—but not absolute density of—cancer associated fibroblasts in tumor ROIs (Figure 4D), as well as relative abundance of co-expressed PDPN+CXCL1+ iCAF populations in corresponding tumor sections (29.7 ± 8.8% vs 18.4 ± 7.4% tumor area; p<0.001; Figure 4E).

NLR attenuation during chemotherapy dampens L-6/STAT-3 signaling in the PDAC TME

The reprogramming of iCAF polarization following NLR attenuation during chemotherapy in the preclinical models was reflected in decreased intratumoral IL-6 and CXCL-1 (data not shown) levels following treatment with gemcitabine/paclitaxel +anti-Ly6G (p=0.0002), but not anti-Ly6G alone (p=0.06) or gemcitabine/paclitaxel alone (p=0.08) treatment, compared to vehicle treatment (Figure 4F). In parallel with these findings, compared with vehicle, anti-Ly6G alone, or gemcitabine/paclitaxel alone, gemcitabine/paclitaxel +anti-Ly6G treatment resulted in significantly lower pSTAT3 expression in the tumor cell/epithelial compartment in vivo (p<0.01; Figure 4G).

Neutrophil-derived IL-1β induces pancreatic CAF-tumor cell IL-6/STAT-3 signaling

To explore a mechanistic link between tumor-infiltrating neutrophils and iCAF-mediated IL-6/STAT-3 signaling in the PDAC TME, we characterized the secretome of tumor-infiltrating Ly6G+F4/80- neutrophils isolated from orthotopic KPC tumors, revealing IL-1β as the most robustly secreted cytokine (Figure 5A). Systemic NLR attenuation with anti-Ly6G treatment—with or without chemotherapy—resulted in significant diminution of IL-1β secretion in tumor lysates compared with vehicle or chemotherapy treatment in vivo (ANOVA p<0.001; Figure 5B), likely due to its incident reduction in systemic and tumor-infiltrating Ly6G+ cells (see Figure 3).
Figure 5.

Neutrophil-derived IL-1β induces pancreatic fibroblast-tumor cell IL-6/STAT-3 signaling.

(A) Bubble plot representing multiplex cytokine array performed on condition media from column-sorted Ly6G+F4/80- neutrophils (24-hr culture) derived from whole pancreata of KPC orthotopic mice. The chemiluminescent intensity of the six most robustly expressed cytokines is quantified as mean pixel density; (B) Quantification of IL-1β ELISA (pg/ml) from whole tumor protein lysates from vehicle, NLR-attenuating αLy6G, gemcitabine plus paclitaxel (Gem/Pac) alone, and Gem/Pac+ αLy6G treatment groups in orthotopic KPC tumor-bearing mice (n=9 mice/group); (C–D) Schematic of experimental design illustrating ex vivo co-culture of KPC CAFs with intratumoral column-sorted Ly6G+F4/80 cells from whole pancreata of KPC orthotopic mice, with or without pre-treatment of CAFs with anakinra (α-IL1R1 antibody) or pre-treatment of neutrophils with α-IL-1β neutralizing antibody (left); (C) qPCR analysis representing relative fold change in Il6 gene expression, and (D) quantification of IL-6 ELISA (pg/ml) from conditioned media collected from co-culture conditions comparing CAFs alone with CAFs co-cultured with intra-tumoral neutrophils with or without anakinra or α-IL-1β antibody pre-treatment. Results show mean ± SEM of three biologic replicates; (E) Western blot analysis of pSTAT3Y705 and total STAT3 (tSTAT3) levels from KPC tumor cell lysates following incubation with conditioned media (CM) from ex vivo intratumoral neutrophil (NP)-CAF co-cultures, either alone or treated with anti-IL-1β or IL-6 neutralizing antibodies. All experiments were repeated once for reproducibility, and all data points represent biologic replicates. All between-group statistics represent multiple comparison testing using Tukey’s post-hoc instrument in one-way ANOVA; (F) Graphical summary of proposed neutrophil-CAF-tumor cell IL-1β/IL-6/STAT-3 signaling axis that underlies the associated between NLR dynamics and chemotherapy response in PDAC. When absolute p-values not provided: *, p≤0.05; **, p≤0.01; ***, p≤0.001.

Neutrophil-derived IL-1β induces pancreatic fibroblast-tumor cell IL-6/STAT-3 signaling.

(A) Bubble plot representing multiplex cytokine array performed on condition media from column-sorted Ly6G+F4/80- neutrophils (24-hr culture) derived from whole pancreata of KPC orthotopic mice. The chemiluminescent intensity of the six most robustly expressed cytokines is quantified as mean pixel density; (B) Quantification of IL-1β ELISA (pg/ml) from whole tumor protein lysates from vehicle, NLR-attenuating αLy6G, gemcitabine plus paclitaxel (Gem/Pac) alone, and Gem/Pac+ αLy6G treatment groups in orthotopic KPC tumor-bearing mice (n=9 mice/group); (C–D) Schematic of experimental design illustrating ex vivo co-culture of KPC CAFs with intratumoral column-sorted Ly6G+F4/80 cells from whole pancreata of KPC orthotopic mice, with or without pre-treatment of CAFs with anakinra (α-IL1R1 antibody) or pre-treatment of neutrophils with α-IL-1β neutralizing antibody (left); (C) qPCR analysis representing relative fold change in Il6 gene expression, and (D) quantification of IL-6 ELISA (pg/ml) from conditioned media collected from co-culture conditions comparing CAFs alone with CAFs co-cultured with intra-tumoral neutrophils with or without anakinra or α-IL-1β antibody pre-treatment. Results show mean ± SEM of three biologic replicates; (E) Western blot analysis of pSTAT3Y705 and total STAT3 (tSTAT3) levels from KPC tumor cell lysates following incubation with conditioned media (CM) from ex vivo intratumoral neutrophil (NP)-CAF co-cultures, either alone or treated with anti-IL-1β or IL-6 neutralizing antibodies. All experiments were repeated once for reproducibility, and all data points represent biologic replicates. All between-group statistics represent multiple comparison testing using Tukey’s post-hoc instrument in one-way ANOVA; (F) Graphical summary of proposed neutrophil-CAF-tumor cell IL-1β/IL-6/STAT-3 signaling axis that underlies the associated between NLR dynamics and chemotherapy response in PDAC. When absolute p-values not provided: *, p≤0.05; **, p≤0.01; ***, p≤0.001. Next, we ascertained if neutrophil-derived IL-1β was contributory to CAF-tumor cell IL-6/STAT-3 signaling. Ex vivo co-cultures of KPC CAFs with tumor-infiltrating Ly6G+F4/80- neutrophils derived from orthotopic tumor-bearing KPC mice induced a nearly 20-fold increase in CAF-intrinsic Il6 transcription (p<0.0001), which was significantly abrogated by either neutralization of IL-1β (p<0.0001) or by pre-incubation of CAFs with IL-1R1 inhibitor Anakinra (Nagathihalli et al., 2016; p<0.0001; Figure 5C). These results were validated by IL-6 ELISA, which demonstrated a dramatic increase in IL-6 secretion from CAF-neutrophil co-cultures, and was significantly rescued with either IL-1β or IL-1R1 inhibition (all p<0.0001; Figure 5D). Cxcl1 transcription in CAFs—another key iCAF marker—was similarly induced nearly 22-fold following co-culture with tumor-infiltrating neutrophils, and significantly abrogated with either IL-1β or IL-1R1 inhibition (all p<0.0001; Appendix 1—figure 6).
Appendix 1—figure 6.

Neutrophil-derived IL-1β is a novel mediator of inflammatory CAF polarization in pancreatic cancer.

Schematic of experimental design illustrating ex vivo co-culture of KPC CAFs with intratumoral column-sorted Ly6G+F4/80 cells from whole pancreata of KPC orthotopic mice, with or without pre-treatment of CAFs anakinra (α-IL1R1 antibody) or pre-treatment of neutrophils with α-IL-1β neutralizing antibody (left). qPCR analysis representing relative fold change in Cxcl1 gene expression comparing CAFs alone with CAFs co-cultured with intra-tumoral neutrophils with or without anakinra or α-IL-1β antibody pre-treatment (right). Results show mean ± SEM of three biologic replicates; *, p<0.05; **, p<0.01; ***, p<0.001

Finally, KPC tumor cells demonstrated significantly higher pSTAT3 expression when incubated with conditioned media (CM) from intratumoral neutrophil-CAF co-cultures alone compared with CM from neutrophil-CAF co-cultures treated with either anti-IL-1β or anti-IL-6 neutralizing antibodies (Figure 5E). Together, these data reveal a role for neutrophil-derived IL-1β in promoting iCAF polarization and inducing CAF-tumor cell IL-6/STAT3 signaling in the PDAC TME, which is a central mediator of chemoresistance (Figure 5F).

Discussion

In selected patients with operable pancreatic cancer undergoing curative-intent pancreatectomy following modern chemotherapy, we identify for the first time that NLR dynamics during NAC correlate strongly with pathologic response, and an NLR score encompassing these dynamics is prognostic of disease-free and overall survival. While these novel findings warrant large-scale multi-institutional validation to strengthen and/or reconcile data from heterogeneous PDAC populations (Hasegawa et al., 2016; Kubo et al., 2019; Strong et al., 2022), the present data indicate that both baseline NLR and NLR dynamics may be promising metrics of response and overall disease trajectory in patients with localized PDAC, recapitulating evidence from other gastrointestinal cancers (Sato et al., 2012). The relationship between systemic chemotherapy, ensuing cytotoxicity/tumor-cell death and its immune repercussions, neutrophil mobilization and trafficking, adaptive immune dysfunction, and clinical outcomes in solid tumors is complex (Banerjee et al., 2013). Notwithstanding, since systemic chemotherapy does not appear to impact tumor-infiltrating neutrophils (Nywening et al., 2018) or circulating NLR in our preclinical studies, these data also suggest that therapeutic strategies to attenuate NLR during NAC may improve pathologic response in operable PDAC. While the etiologies underlying the attenuation of endogenous NLR in patients demonstrating decreasing ΔNLR during NAC in this study are undoubtedly complex and remain unclear, modeling this phenomenon in preclinical models suggests that a ‘priming’ phase in which the systemic NLR is actively dampened improves chemosensitivity and is associated with heightened adaptive anti-tumor immunity in the PDAC TME. In our preclinical modeling, attenuation of NLR immediately preceding and during gemcitabine/paclitaxel chemotherapy not only improved CD4+ T-helper and CD8+ T-effector cell trafficking, but also amplified CD4+/CD8+ central memory skewness as well as CD8+ T-cell antigen experience and degranulating capacity. Our data add nuance to previous findings indicating that depletion of Ly6G+ neutrophilic myeloid-derived suppressor cells unmasks adaptive immunity (Stromnes et al., 2014), or that ablation of CXCR2+ tumor-associated neutrophils augments IFN-γ+CD8+ T-cell infiltration to potentiate FOLFIRINOX responses in PDAC models (Nywening et al., 2018). Given that systemic neutrophilic silencing is not only clinically impractical, but also drives a compensatory and dynamic myelopoiesis (e.g. of CCR2+ macrophages) that thwarts anti-tumor immunity (Nywening et al., 2018), the chemosensitizing and immune-potentiating effects of NLR attenuation in our model may be related to the disruption of specific tolerogenic functions inherent to tumor-associated neutrophils. Indeed, ongoing investigation in our laboratory is focused on deciphering and targeting neutrophil-intrinsic tolerogenic mechanisms that orchestrate immunosuppressive tumor-stromal-immune crosstalk and promote therapeutic resistance in PDAC. One such potential mechanism governing therapeutic resistance unveiled in the present study is the previously unrecognized role of neutrophil-derived IL-1β in driving iCAF polarization and CAF-tumor cell IL-6/STAT-3 signaling in the PDAC TME. As such, the improved chemosensitivity associated with NLR attenuation in our preclinical models suggest that combining chemotherapy with therapeutic strategies to mitigate neutrophil-stromal-tumor cell IL-1β/IL-6/STAT-3 signaling in PDAC patients may be advantageous. Results from the Precision PromiseSM trial investigating anti-IL-1β antagonism in combination with gemcitabine/nab-paclitaxel and PD-1 inhibition in patients with advanced PDAC (NCT04581343) are eagerly awaited. Ultimately, decoding the intersection between NLR dynamics, the balance between tumor-permissive inflammation and anti-tumor adaptive immunity, and tumor-stromal-immune cellular crosstalk that perpetuates chemoresistant signaling circuitries in PDAC may lay the foundation for novel interventions to overcome chemotherapy resistance and improve contemporary outcomes in this lethal malignancy.

Grant support

Supported by KL2 career development grant by Miami CTSI under NIH Award UL1TR002736, Stanley Glaser Foundation, American College of Surgeons Franklin Martin Career Development Award, and Association for Academic Surgery Joel J. Roslyn Faculty Award (to J. Datta); NIH R01 CA161976 (to N.B. Merchant); and NCI/NIH Award P30CA240139 (to J. Datta and N.B. Merchant). Iago De Castro et al. is a fundamental new study that conveys to readers that neutrophil-to-lymphocyte ratio dynamics could predict pancreatic cancer pathologic response to neoadjuvant therapy. The study is compelling in that it specifically provides means to determine the effect that front-line neoadjuvant therapy could have on the function of key microenvironmental cells (e.g., T Cell and Cancer-associated fibroblast) if combined with an anti-Ly6G treatment. Our editorial process produces two outputs: i) public reviews designed to be posted alongside the preprint for the benefit of readers; ii) feedback on the manuscript for the authors, including requests for revisions, shown below. We also include an acceptance summary that explains what the editors found interesting or important about the work. Decision letter after peer review: Thank you for submitting your article "Neutrophil-Mediated Stromal-Tumor IL-6/STAT-3 Signaling Underlies the Association between Neutrophil-to-Lymphocyte Ratio Dynamics and Chemotherapy Response in Localized Pancreatic Cancer: A Hybrid Clinical-Preclinical Study" for consideration by eLife. Your article has been reviewed by 2 peer reviewers, and the evaluation has been overseen by myself, acting as the Reviewing Editor, and by Wafik El-Deiry as the Senior Editor. The following individual involved in the review of your submission has agreed to reveal their identity: Mara Sherman (Reviewer #2). We have discussed the reviews with one another, and I have drafted this to help you prepare a revised submission. We believe your study should be revised prior to its acceptance in order to address the following four main points: 1. Relevance to the human condition. 2. Stronger link to CAF transitions. 3. Considering/discussing previous studies related to yours. 4. Strengthening the anti-Ly6G specificity proof. Reviewer #1 (Recommendations for the authors): 1. My concern is the relevance of CAFs to the correlations observed in the human cohort. The authors should strengthen this part of the study to support the claim that CAF subpopulations transition also in the human disease. Do patients with low neutrophil infiltration have less iCAFs and a better prognosis? The authors should show this by immunostaining of human patient samples for which NLR analysis was done with CAF markers. 2. Following up on the previous comment, the data for CAF transitions is based on FACS with negative selection for immune, endothelial and epithelial markers and positive selection for PDPN. While these are most likely CAFs, PDPN is not an exclusive marker for CAFs. Since this data is not shown in the human cohort, the authors should perform immunofluorescent staining to show, in situ, that the cells affected by these treatments are indeed CAFs. 3. Statistical tests: Some of the differences shown do not seem to be significant. For example, in Figure 2A, C – did the authors correct for multiple comparisons? This should be detailed in the legends and methods. 4. Figure 3: FACS results in viSNE maps are not clear. The scale is unclear and it seems that anti-Ly6G+ expresses Ly6G+. The T cell panel also doesn't appear to indicate a decrease in PD-1. The authors should also provide histograms or dot plots. 5. Figure 4: Anti-Ly6G treatment resulted in a significant reduction of IL-1 secretion, however, the authors did not show any effect of gemcitabine/paclitaxel treatment, since this treatment could increase IL-1. Reviewer #2 (Recommendations for the authors): The prognostic significance of NLR for response to neoadjuvant chemotherapy among PDAC patients has been assessed in prior studies not presently cited here, including PMID: 33517697 and PMID: 31549202. The former (Strong et al., Am Surg, 2021) addresses NLR dynamics during neoadjuvant treatment, and in this study, the authors concluded that change in NLR does not predict pathologic response or survival among resectable PDAC patients. It is important for de Castro Silva et al. to discuss this study and provide a rationale that may underlie these distinct conclusions. In addition, while the preclinical results using anti-Ly6G in vivo are exciting, Ly6G is also expressed by granulocytes and some monocytes in addition to neutrophils. The authors should either state this caveat with respect to the lack of specificity for neutrophils in the manuscript text or inhibit neutrophils in vivo using an orthogonal approach to strengthen their claims with respect to neutrophil function. Finally, in light of the heterogeneity within the myeloid compartment observed across PDAC mouse models as well as patients, it would be informative to test the therapeutic potential of anti-Ly6G plus chemotherapy in an independent mouse model and report a limited number of key results (i.e., tumor growth and metastatic spread). We believe your study should be revised prior to its acceptance in order to address the following four main points: 1. Relevance to the human condition. We have added a substantial series of experiments in human PDAC tumors, utilizing single-cell imaging mass cytometry and immunofluorescence to corroborate the novel relationship between tissue-level NLR, stromal inflammation/density, and chemotherapy response in human PDAC. Please see response to Reviewer 1 comment #1. 2. Stronger link to CAF transitions. We have provided new data in PKT mice and human tumor sections showing co-immunofluorescence staining of stromal PDPN and CXCL1—reflective of iCAF populations—to strengthen data previously shown by flow cytometry in the original manuscript. We have also shown single cell RNA sequencing data from our recent publication (Datta et al., Gastroenterology 2022) to reinforce the relevance of CD45negCD31negPDPNpos as a bona fide CAF marker. Please see response to Reviewer 1 comment #2 and Reviewer 2 comment #3. 3. Considering/discussing previous studies related to yours. We have included indicated references in the revised Introduction and Discussion. 4. Strengthening the anti-Ly6G specificity proof. We have performed new experiments demonstrating the specificity of NLR-attenuating anti-Ly6G antibody for neutrophils, but not eosinophil or basophil populations in vivo. Please see response to Reviewer #2 comment #2.Reviewer #1 (Recommendations for the authors): 1. My concern is the relevance of CAFs to the correlations observed in the human cohort. The authors should strengthen this part of the study to support the claim that CAF subpopulations transition also in the human disease. Do patients with low neutrophil infiltration have less iCAFs and a better prognosis? The authors should show this by immunostaining of human patient samples for which NLR analysis was done with CAF markers. We thank the reviewer for this important suggestion. We have now made substantial additions to the revised manuscript to address this deficit. We identified 6 human PDAC tumors with pre-chemotherapy tissue, and stratified these based on ultimate post-chemotherapy pathologic response into partial/complete vs. poor/absent. We then used a novel Hyperion imaging mass cytometry (IMC) platform to perform single-cell image segmentation and examine the relationship between tissue-level NLR (CD11b+CD15+ neutrophil:CD3+CD8+ T-cell ratios), chemotherapy response, and stromal density. These clinical and relevant IMC data can be found in the new Appendix-Table 2. To further examine differences in stromal inflammation in these clinically annotated human PDAC samples, we performed co-IF for PDPN (see response to comment #2) and CXCL1 (iCAF marker). Results are highly supportive of our main conclusion, and validate recent findings reported from the WashU group suggesting that iCAF polarization in the PDAC tumor microenvironment is associated with chemotherapy resistance (Zhou et al., Nat Genet 2022). Our findings are described in the revised Results under a new section (pg. 12): “Reduced tissue-level NLR correlates with chemotherapy response, CAF density, and stromal inflammation at single-cell resolution in human PDAC. To examine the association between tissue-level NLR, stromal density/inflammation, and chemotherapy response (partial/complete [n=3], poor/absent [n=3]) in human PDAC tumors at single-cell resolution, pathologist-selected regions of interest (ROI) from each tumor section probed with metal ion-conjugated antibodies for pancytokeratin (PanCK:epithelial), α-smooth muscle actin (α-SMA:fibroblast), CD11b and CD15 (neutrophil), and CD3 and CD8 (T-cell) were laser-ablated, and atomized ions were acquired using time-of-flight mass cytometry (cyTOF) (Figure 4C). Image segmentation and quantification revealed significantly higher ratio of CD11b+CD15+ to CD3+CD8+ cells (NLR; normalized to 5000 total single cells) in pre-treatment tumors from PDAC patients who demonstrated poor/absent pathologic response compared with partial/complete response (15.8±2.8 vs. 7.4±3.9; P=0.039) following neoadjuvant chemotherapy (Figure 4D). Interestingly, increased NLR in patients with poor/absent pathologic response correlated with significantly higher mean intensity of α-SMA expression (41.9±26.6 vs. 18.4±16.6 pixels/cell; P<0.001) in—but not absolute density of—cancer associated fibroblasts in tumor ROIs (Figure 4D), as well as relative abundance of co-expressed PDPN+CXCL1+ iCAF populations in corresponding tumor sections (29.7±8.8% vs. 18.4±7.4% tumor area; P<0.001; Figure 4E). 2. Following up on the previous comment, the data for CAF transitions is based on FACS with negative selection for immune, endothelial and epithelial markers and positive selection for PDPN. While these are most likely CAFs, PDPN is not an exclusive marker for CAFs. Since this data is not shown in the human cohort, the authors should perform immunofluorescent staining to show, in situ, that the cells affected by these treatments are indeed CAFs. (1) PDPN has been used as a pan-CAF marker in multiple high-profile PDAC studies. A few examples with relevant points are presented here—PMID 31699795: PDPN is expressed in fibroblasts and CAFs; CD31+ stromal cells were predominantly PDPN− blood endothelial cells; PMID 33495315: Used PDPN to define CAFs both via flow cytometry and IHC; PMID 31197017: Defined PDPN as a pan-CAF marker; PMID 30366930: PDPN used to sort and isolate CAFs; PMID 30575030: PDPN used to identify CAFs in human samples, including IHC. (2) We have also invoked some of these studies in our revised manuscript (pg. 12). We now show single-cell RNA sequencing in both the spontaneous PKT PDAC model (Datta J et al., Gastroenterology 2022), as well as human PDAC patients (Steele et al., Nat Cancer 2020) demonstrating near-exclusive expression of PDPN in fibroblast populations in the murine and human PDAC tumor microenvironments. These data are now invoked in the revised Results (pg. 12): “Furthermore, leveraging the near-exclusive expression of PDPN/Pdpn in human and murine PDAC-associated CAFs via scRNAseq (Appendix-Figure 5B&C)…” (3) Endothelial cells are the other dominant cell subset in which PDPN is expressed. For this reason, we gated out CD31+ cells prior to examining Ly6C and MHC-II markers in PDPN+ cells. This gating strategy has been validated previously (Biffi et al., Cancer Discovery 2019) and we have now shown our strategy in Appendix-Figure 5C. (4) We have now performed immunofluorescence co-staining of PDPN and CXCL1 in both PKT genetic murine tumors, as well as in human PDAC sections (see response to previous comment) as an orthogonal approach to show the relevance of PDPN as a CAF marker and PDPN+CXCL1+ fibroblasts as representative of inflammatory CAFs. The data from PKT mice are described in the revised Results (pg. 12): “We observed significant reduction in co-expressing PDPN+CXCL1+ stromal cells—presumed iCAFs—in tumors from PKT genetically engineered mice treated with gemcitabine/paclitaxel+anti-Ly6G compared with gemcitabine/paclitaxel alone (P=0.02; Figure 4B), validating findings from the KPC orthotopic model.”. 3. Statistical tests: Some of the differences shown do not seem to be significant. For example, in Figure 2A, C – did the authors correct for multiple comparisons? This should be detailed in the legends and methods. We apologize for the oversight. Yes, the comparisons shown in Figures 2A-C were performed using ANOVA with Tukey’s multiple-comparison post-hoc testing. This is now detailed in the revised Appendix (Supplementary Methods) section: “Results are shown as mean ± SEM. Multiple comparisons were performed using one-way ANOVA followed by Tukey’s multiple comparisons test.” We have also updated the Figure 2, 4, 5 legends to reflect these edits (pg. 22-23, 27, 28). 4. Figure 3: FACS results in viSNE maps are not clear. The scale is unclear and it seems that anti-Ly6G+ expresses Ly6G+. The T cell panel also doesn't appear to indicate a decrease in PD-1. The authors should also provide histograms or dot plots. We have improved the readability of the viSNE maps (see below). Regarding scant Ly6G expression in anti-Ly6G treated mice, we gently remind the reviewer that our intention was not to deplete but attenuate NLR (please see Appendix-Figure 3A) to mimic NLR attenuation in PDAC patients. We have reinforced this in the revised Supplementary Methods in Appendix: “Our specific intention was to attenuate, but not deplete, systemic neutrophils to simulate the endogenous decline in ΔNLR during neoadjuvant chemotherapy”, as well as revised Results (pg. 11): “In tumor-bearing animals, NLR attenuation significantly reduced—but did not abolish—circulating Ly6G+Ly6CdimF4/80- neutrophilic cells (Figure 3A).” We also provide adjoining histograms for these comparisons in Figure 3A. As we and multiple groups have done previously, we use PD-1 as a marker of T-cell antigen experience (and not exhaustion per se, which has a more complex expression profile). We actually observed a significant increase in mean fluorescence intensity (MFI) of PD-1 in tumor-infiltrating CD8+ T-cells—but not absolute number of PD-1+CD8+ T-cells—in chemotherapy+anti-Ly6G groups compared with either treatment alone. To clarify these comparisons between groups, we have removed prior Appendix-Figure 5 and have provided these histograms adjacent to the viSNE maps in Figure 3C. 5. Figure 4: Anti-Ly6G treatment resulted in a significant reduction of IL-1 secretion, however, the authors did not show any effect of gemcitabine/paclitaxel treatment, since this treatment could increase IL-1. We thank the reviewer for this insightful comment. We have now performed and shown these data in the revised manuscript. As the reviewer predicted, gemcitabine/paclitaxel chemotherapy treatment modestly (but not significantly) increases IL-1β, but combination anti-Ly6G+chemotherapy treatment recapitulates the effect of anti-Ly6G alone by significantly reducing IL-1β secretion compared with chemotherapy alone. These findings mirror the reduction in intratumoral Ly6G/Gr1+ neutrophilic cells observed in both anti-Ly6G treated cohorts. To address the reviewer comment, these data are now described in revised Results (pg. 13): “Systemic NLR attenuation with anti-Ly6G treatment—with or without chemotherapy—resulted in significant diminution of IL-1β secretion in tumor lysates compared with vehicle or chemotherapy treatment in vivo (ANOVA P<0.001; Figure 5E), likely due to its incident reduction in systemic and tumor-infiltrating Ly6G+ cells (see Figure 3).” Reviewer #2 (Recommendations for the authors): The prognostic significance of NLR for response to neoadjuvant chemotherapy among PDAC patients has been assessed in prior studies not presently cited here, including PMID: 33517697 and PMID: 31549202. The former (Strong et al., Am Surg, 2021) addresses NLR dynamics during neoadjuvant treatment, and in this study, the authors concluded that change in NLR does not predict pathologic response or survival among resectable PDAC patients. It is important for de Castro Silva et al. to discuss this study and provide a rationale that may underlie these distinct conclusions. We thank the reviewer for this important comment. While acknowledging that the Strong et al., study (PMID: 33517697) has a different conclusion than our study, several issues limiting its applicability to our findings should be recognized and discussed: 1) These data are presented from an institution that sequences most patients with localized disease to a surgery-first approach, calling into question a substantial selection bias that compels utilization of neoadjuvant therapy and confounds the study conclusions. 2) Utilization of non-standard pathologic response nomenclature—their study dichotomizes response by < or ≥90% response—which is not standard in the field. Our study uses standard College of American Pathologists (CAP) criteria to categorize pathologic response. It is unknown how these two response metrics compare. 3) There is concerning covariate imbalance in good vs. poor responders in their study, wherein 88% of patients with “good” pathologic response underwent neoadjuvant radiation vs. only 36% of patients with poor response (P<0.001). Moreover, this variable was not accounted for when examining the impact of NLR on pathologic response. 4) Another imbalance was observed in the duration of chemotherapy between the cohorts, with “good” responders receiving median 22 weeks of NAC vs. only 12 weeks in the “poor” responders. Again, this variable is not accounted for in a multivariable analysis. Our analysis, on the other hand, controls for duration of NAC in the multivariable analysis (OR 1.09, 95% CI 0.68-1.75, P=0.73), which is shown in Appendix-Table 3. 5) Of 93 patients included in the study, 14 patients had unknown baseline NLR values, of which 12 were in the poor responder cohort. 6) Finally, despite these major issues, there was a suggestion that “good” responders actually had attenuation of NLR during chemotherapy (median ΔNLR = -0.02) compared with “poor” responders (median ΔNLR = +0.06; Table 2), although this comparison was not statistically significant. These findings are consistent with our present study. Despite these major issues, we have incorporated this reference in the revised Discussion (pg. 14): “While these novel findings warrant large-scale multi-institutional validation to strengthen and/or reconcile data from heterogeneous PDAC populations [PMID: 26893780, 31549202, 33517697]…” We apologize for overlooking the Japanese study that the reviewer points out (PMID: 31549202), which supports our overall conclusions. We have invoked this reference in the revised Introduction (pg. 4): “…recent evidence implicates the value of pre-surgery NLR in forecasting recurrence in patients undergoing upfront pancreatectomy [4], as well as pre- and post-treatment NLR in predicting pathologic response following neoadjuvant chemoradiotherapy [5,6].” In addition, while the preclinical results using anti-Ly6G in vivo are exciting, Ly6G is also expressed by granulocytes and some monocytes in addition to neutrophils. The authors should either state this caveat with respect to the lack of specificity for neutrophils in the manuscript text or inhibit neutrophils in vivo using an orthogonal approach to strengthen their claims with respect to neutrophil function. We thank the reviewer for this insightful comment. We now provide evidence that NLR-attenuating doses of anti-Ly6G Ab specifically disrupt intratumoral neutrophils/neutrophilic MDSCs and to a lesser extent monocytes/monocytic MDSCs. More importantly, to address the reviewer’s comment, we do not observe any differences in other granulocytic populations between vehicle- and anti-Ly6G Ab-treated cohorts, namely comparing tumoral (and circulating) CD11b+F4/80-Siglec-F+ eosinophils and F4/80-CD11c-FcεR1+ basophils. These data have been provided in the Supplementary Methods section in Appendix: “The anti-Ly6G clone 1A8 neutralizing antibody construct is a rat IgG2a that induces a Fc-dependent opsonization and phagocytosis of Ly6G+ cells. To demonstrate the specificity of this antibody, a separate experiment showed that NLR-attenuating anti-Ly6G treatment in KPC orthotopic tumor-bearing mice specifically reduced splenic (data not shown) and intratumoral CD11b+F4/80-Ly6G+ neutrophils, but not other granulocytic populations—namely CD11b+F4/80-Siglec-F+ eosinophils and F4/80-CD11c-FcεR1+ basophils—compared with vehicle treatment (Appendix-Figure 7).” With respect to an orthogonal approach to constraining neutrophils and its effect on chemosensitivity, data from Linehan and colleagues have revealed that CXCR2 inhibition sensitizes PDAC to FOLFIRINOX chemotherapy. We have invoked these prior data in the revised Discussion (pg. 15) but did not repeat these experiments in the present manuscript: “…or that ablation of CXCR2+ tumor-associated neutrophils augments IFN-γ+CD8+ T-cell infiltration to potentiate FOLFIRINOX responses in PDAC models (Nywening TM et al., Gut 2018).” Finally, in light of the heterogeneity within the myeloid compartment observed across PDAC mouse models as well as patients, it would be informative to test the therapeutic potential of anti-Ly6G plus chemotherapy in an independent mouse model and report a limited number of key results (i.e., tumor growth and metastatic spread). We agree with this important comment. To address the reviewer’s suggestion, we performed pharmacologic Ly6G attenuation with gemcitabine+paclitaxel chemotherapy vs. chemotherapy alone in the genetically engineered Ptf1acre/+;LSL-KrasG12D/+;Tgfbr2flox/flox (PKT) mouse model. We have published extensively on this model—mice form aggressive tumors by week 4 and die of local (but not metastatic) disease burden by 6.5 weeks (e.g., Datta J et al., Gastroenterology 2022; Nagathihalli et al., Cancer Res 2018). We have detailed this experimental design in Appendix. We performed an endpoint experiment after 2 weeks of anti-Ly6G treatment + chemotherapy vs. chemotherapy alone vs. vehicle (omitted anti-Ly6G alone for these experiments), and observed significantly reduced tumor burden in cohorts treated with anti-Ly6G+chemo vs. chemo alone. We also observed reduced tumor area upon histologic analysis by a board-certified GI pathologist. These results are now described in the revised Results (pg. 10): “To validate these observations in a spontaneous PDAC mouse model, we treated 4-week old PKT mice with vehicle, gemcitabine/paclitaxel alone, and gemcitabine/paclitaxel plus anti-Ly6G combinations for 2 weeks. In this model as well, NLR attenuation with anti-Ly6G improved chemosensitivity vs. chemotherapy alone as evidenced by decreased primary tumor weights (P=004; Figure 2E) and tumor area by H&E staining (P=0.008; Figure 2F) at endpoint analysis.” In addition, we validated the reduction in inflammatory CAF populations—characterized by PDPN+CXCL1+ stromal cells—in the combination anti-Ly6G+gemcitabine/paclitaxel treatment arm compared with chemotherapy alone or vehicle treatment in PKT mice. These data are now described in the revised Results (pg. 12): “Furthermore … we observed significant reduction in co-expressing PDPN+CXCL1+ inflammatory CAF populations in tumors from PKT genetically engineered mice treated with gemcitabine/paclitaxel+anti-Ly6G compared with gemcitabine/paclitaxel alone (P=0.02; Figure 4B), validating findings from the KPC orthotopic model.”
Key resources table
Reagent type (species) or resourceDesignationSource or referenceIdentifiersAdditional information
Cell line (Mus musculus)Pancreatic Tumor Cells from KrasLSL-12D/+;Trp53R172H/+;Pdx1Cre (KPC) mouseBen Stanger/UPennKPC6694c2
Cell line (Mus musculus)Tumor associated fibroblasts from KPC mouse Nagathihalli et al., 2016 KPC CAFs
Other Ptf1aCre/+;KrasLSL-G12D/+;Tgfbr2flox/flox Datta et al., 2022 PKTGenetically engineered mouse
AntibodyAnti-Ly6G (Rat monoclonal) reactive to mouseBioXcellClone 1A8Catalog# BE0075-125 μg/dose
AntibodyAnti-IL-1β neutralizing antibody (E. coli, polyclonal)R&D SystemsCatalog# AF-401-NA1:80
AntibodyCxcl1 (Rabbit, monoclonal) Reactive to human and mouseAbcamCatalog# ab864361:500
AntibodyPodoplanin (Mouse, monoclonal) Reactive to humanCell SignallingCatalog# 269811:200
AntibodyPodoplanin (Syrian hamster, monoclonal) Reactive to mouseAbcamCatalog# ab923191:200
AntibodyCD3 (170Er, Human, monoclonal) 3170019DFluidigm3170019D1:1000
AntibodyCD11B (149Sm, Human, monoclonal)Fluidigm3149028D1:1000
Antibodyα-SMA (141Pr, Human, monoclonal)Fluidigm314017D1:1000
AntibodyPan-Cytokeratin (148Nd, Human, monoclonal)Fluidigm3148022D1:1000
AntibodyCD15 (164Dy, Human, monoclonal)Fluidigm3164001B1:1000
AntibodyCD8 (146Nd, Human, monoclonal)Fluidigm3146001B1:1000
Chemical compound, drugAnakinraSOBIPharmaceuticalsα-IL-1R1 inhibitor
Sequence-based reagentCxcl1 Primer - MouseQiagenGene ID - QT00115647
Sequence-based reagentIl6 Primer - MouseQiagenGene ID - QT00098875
Commercial assay or kitCytokine array - MouseR&D SystemsARY006
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Authors:  S Banerjee; G Rustin; J Paul; C Williams; S Pledge; H Gabra; G Skailes; A Lamont; A Hindley; G Goss; E Gilby; M Hogg; P Harper; E Kipps; L-A Lewsley; M Hall; P Vasey; S B Kaye
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5.  Inhibition of Hedgehog Signaling Alters Fibroblast Composition in Pancreatic Cancer.

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8.  Multimodal Mapping of the Tumor and Peripheral Blood Immune Landscape in Human Pancreatic Cancer.

Authors:  Nina G Steele; Eileen S Carpenter; Samantha B Kemp; Veerin R Sirihorachai; Stephanie The; Lawrence Delrosario; Jenny Lazarus; El-Ad David Amir; Valerie Gunchick; Carlos Espinoza; Samantha Bell; Lindsey Harris; Fatima Lima; Valerie Irizarry-Negron; Daniel Paglia; Justin Macchia; Angel Ka Yan Chu; Heather Schofield; Erik-Jan Wamsteker; Richard Kwon; Allison Schulman; Anoop Prabhu; Ryan Law; Arjun Sondhi; Jessica Yu; Arpan Patel; Katelyn Donahue; Hari Nathan; Clifford Cho; Michelle A Anderson; Vaibhav Sahai; Costas A Lyssiotis; Weiping Zou; Benjamin L Allen; Arvind Rao; Howard C Crawford; Filip Bednar; Timothy L Frankel; Marina Pasca di Magliano
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