Literature DB >> 36107345

DNA Visualization Using Fluorescent Proteins.

Xuelin Jin1, Y Tehee Kim2, Kyubong Jo3.   

Abstract

DNA binding fluorescent proteins are a powerful tool for single-molecule visualization. In this chapter, we discuss a protocol for the synthesis of DNA binding fluorescent proteins and visualization of single DNA molecules. This chapter includes stepwise methods for molecular cloning, reversible staining, two-color staining, sequence-specific staining, and microscopic visualization of single DNA molecules in a microfluidic device. This content will be useful for DNA characterization using DNA binding fluorescent proteins and its visualization at the single-molecule level.
© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Characteristics; DNA binding fluorescent protein; Microfluidic device; Sequence-specific staining; Single-molecule observation

Mesh:

Substances:

Year:  2023        PMID: 36107345     DOI: 10.1007/978-1-0716-2667-2_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  19 in total

1.  A single-molecule barcoding system using nanoslits for DNA analysis.

Authors:  Kyubong Jo; Dalia M Dhingra; Theo Odijk; Juan J de Pablo; Michael D Graham; Rod Runnheim; Dan Forrest; David C Schwartz
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-12       Impact factor: 11.205

Review 2.  Caged nucleotides/nucleosides and their photochemical biology.

Authors:  Xinjing Tang; Jinhao Zhang; Jingjing Sun; Yuan Wang; Junzhou Wu; Lihe Zhang
Journal:  Org Biomol Chem       Date:  2013-10-17       Impact factor: 3.876

3.  Visualization of large elongated DNA molecules.

Authors:  Jinyong Lee; Yongkyun Kim; Seonghyun Lee; Kyubong Jo
Journal:  Electrophoresis       Date:  2015-07-07       Impact factor: 3.535

Review 4.  Chromosome dynamics and folding in eukaryotes: Insights from live cell microscopy.

Authors:  Kerstin Bystricky
Journal:  FEBS Lett       Date:  2015-07-17       Impact factor: 4.124

Review 5.  Labeling DNA for single-molecule experiments: methods of labeling internal specific sequences on double-stranded DNA.

Authors:  Hagar Zohar; Susan J Muller
Journal:  Nanoscale       Date:  2011-07-06       Impact factor: 7.790

6.  A simple cytochemical technique for demonstration of DNA in cells infected with mycoplasmas and viruses.

Authors:  W C Russell; C Newman; D H Williamson
Journal:  Nature       Date:  1975-02-06       Impact factor: 49.962

7.  Nanoslit Confined DNA at Low Ionic Strengths.

Authors:  Jinyong Lee; Sulhwa Kim; Huisu Jeong; Gun Young Jung; Rakwoo Chang; Yeng-Long Chen; Kyubong Jo
Journal:  ACS Macro Lett       Date:  2014-09-03       Impact factor: 6.903

8.  Rapid DNA mapping by fluorescent single molecule detection.

Authors:  Ming Xiao; Angie Phong; Connie Ha; Ting-Fung Chan; Dongmei Cai; Lucinda Leung; Eunice Wan; Amy L Kistler; Joseph L DeRisi; Paul R Selvin; Pui-Yan Kwok
Journal:  Nucleic Acids Res       Date:  2006-12-14       Impact factor: 16.971

9.  A general mechanism for competitor-induced dissociation of molecular complexes.

Authors:  Thayaparan Paramanathan; Daniel Reeves; Larry J Friedman; Jane Kondev; Jeff Gelles
Journal:  Nat Commun       Date:  2014-10-24       Impact factor: 14.919

10.  Super-resolution optical DNA Mapping via DNA methyltransferase-directed click chemistry.

Authors:  Charlotte Vranken; Jochem Deen; Lieve Dirix; Tim Stakenborg; Wim Dehaen; Volker Leen; Johan Hofkens; Robert K Neely
Journal:  Nucleic Acids Res       Date:  2014-01-21       Impact factor: 16.971

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