Literature DB >> 36106892

Complete Genome Sequence of the Radioresistant Bacterium Deinococcus aetherius ST0316, Isolated from Air Dust Collected in the Lower Stratosphere above Japan.

Katsuya Satoh1, Kakeru Hagiwara2, Kosuke Katsumata3, Aya Kubo2, Shin-Ichi Yokobori4, Akihiko Yamagishi4, Yutaka Oono1, Issay Narumi2,3.   

Abstract

Deinococcus aetherius ST0316 is a radioresistant bacterium that possess proficient DNA repair capacity. Here, we report the complete genome sequence of D. aetherius, which was obtained by hybrid assembly using short- and long-read sequencing. This sequence will be important information for elucidating the unique DNA repair mechanism of Deinococcus bacteria.

Entities:  

Year:  2022        PMID： 36106892      PMCID： PMC9584286          DOI： 10.1128/mra.00836-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  6 in total

1.  SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation.

Authors:  Wei Shen; Shuai Le; Yan Li; Fuquan Hu
Journal:  PLoS One       Date:  2016-10-05       Impact factor: 3.240

2.  Deinococcus aetherius sp. nov., isolated from the stratosphere.

Authors:  Yinjie Yang; Takashi Itoh; Shin-Ichi Yokobori; Haruo Shimada; Shiho Itahashi; Katsuya Satoh; Hirofumi Ohba; Issay Narumi; Akihiko Yamagishi
Journal:  Int J Syst Evol Microbiol       Date:  2009-08-05       Impact factor: 2.747

3.  Bandage: interactive visualization of de novo genome assemblies.

Authors:  Ryan R Wick; Mark B Schultz; Justin Zobel; Kathryn E Holt
Journal:  Bioinformatics       Date:  2015-06-22       Impact factor: 6.937

4.  CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

Authors:  Donovan H Parks; Michael Imelfort; Connor T Skennerton; Philip Hugenholtz; Gene W Tyson
Journal:  Genome Res       Date:  2015-05-14       Impact factor: 9.043

5.  Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Authors:  Ryan R Wick; Louise M Judd; Claire L Gorrie; Kathryn E Holt
Journal:  PLoS Comput Biol       Date:  2017-06-08       Impact factor: 4.475

6.  DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.

Authors:  Yasuhiro Tanizawa; Takatomo Fujisawa; Yasukazu Nakamura
Journal:  Bioinformatics       Date:  2018-03-15       Impact factor: 6.937
  6 in total

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