Literature DB >> 36106889

Draft Genome Sequence of the Drought-Tolerant Plant Growth-Promoting Rhizobacterium Bacillus altitudinis UKM RB11, Isolated from Upland Paddy Rhizosphere.

Emmyrafedziawati Aida Kamal Rafedzi1,2, Mohd Faizal Abu Bakar3, Izwan Bharudin1, Shazilah Kamarudin1, Farah Diba Abu Bakar1, Abdul Munir Abdul Murad1.   

Abstract

Asia's paddy areas endure tropical and equatorial monsoon climates and are prone to drought stress. The drought-tolerant plant growth-promoting rhizobacterium (PGPR) strain Bacillus altitudinis UKM RB11 was isolated from upland paddy soil in Malaysia. Its 3.7-Mb genome sequence contains numerous genes involved with tolerance to drought and high temperatures and plant growth promotion.

Entities:  

Year:  2022        PMID： 36106889      PMCID： PMC9584285          DOI： 10.1128/mra.00617-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  12 in total

1.  Methods for isolating and characterizing ACC deaminase-containing plant growth-promoting rhizobacteria.

Authors:  Donna M. Penrose; Bernard R. Glick
Journal:  Physiol Plant       Date:  2003-05       Impact factor: 4.500

2.  Scaffolding pre-assembled contigs using SSPACE.

Authors:  Marten Boetzer; Christiaan V Henkel; Hans J Jansen; Derek Butler; Walter Pirovano
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Journal:  Plant Physiol       Date:  1951-01       Impact factor: 8.340

4.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

5.  Genome sequence of the plant growth-promoting rhizobacterium Bacillus sp. strain JS.

Authors:  Ju Yeon Song; Hyun A Kim; Ji-Seoung Kim; Seon-Young Kim; Haeyoung Jeong; Sung Gyun Kang; Byung Kwon Kim; Soon-Kyeong Kwon; Choong Hoon Lee; Dong Su Yu; Beom Seok Kim; Sun-Hyung Kim; Suk Yoon Kwon; Jihyun F Kim
Journal:  J Bacteriol       Date:  2012-07       Impact factor: 3.490

6.  MeDuSa: a multi-draft based scaffolder.

Authors:  Emanuele Bosi; Beatrice Donati; Marco Galardini; Sara Brunetti; Marie-France Sagot; Pietro Lió; Pierluigi Crescenzi; Renato Fani; Marco Fondi
Journal:  Bioinformatics       Date:  2015-03-25       Impact factor: 6.937

7.  An efficient microbiological growth medium for screening phosphate solubilizing microorganisms.

Authors:  C S Nautiyal
Journal:  FEMS Microbiol Lett       Date:  1999-01-01       Impact factor: 2.742

8.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

Review 9.  Microbial Inoculants for Improving Crop Quality and Human Health in Africa.

Authors:  Elizabeth Temitope Alori; Olubukola Oluranti Babalola
Journal:  Front Microbiol       Date:  2018-09-19       Impact factor: 5.640

10.  RaGOO: fast and accurate reference-guided scaffolding of draft genomes.

Authors:  Michael Alonge; Sebastian Soyk; Srividya Ramakrishnan; Xingang Wang; Sara Goodwin; Fritz J Sedlazeck; Zachary B Lippman; Michael C Schatz
Journal:  Genome Biol       Date:  2019-10-28       Impact factor: 13.583
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