Literature DB >> 36102644

Complete Genome Sequence of Dickeya chrysanthemi Bacteriophage DchS19.

Prasanna Mutusamy1, Sasireigga Jaya Jothi1, Yukgehnaish Kumarasan1, Stella Loke2, Su Yin Lee1,3, Heera Rajandas1,4,2, Sivachandran Parimannan1,4,2.   

Abstract

We characterized the complete genome of a lytic Dickeya chrysanthemi bacteriophage, DchS19, which was isolated from a soil sample in Sungai Petani, Kedah, Malaysia. The phage, from the Autographviridae family, has a 39,149-bp double-stranded DNA genome containing 49 protein-coding genes and shares 94.65% average nucleotide identity with Erwinia phage pEp_SNUABM_12.

Entities:  

Year:  2022        PMID： 36102644      PMCID： PMC9583810          DOI： 10.1128/mra.00800-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  13 in total

1.  Practical methods for determining phage growth parameters.

Authors:  Paul Hyman; Stephen T Abedon
Journal:  Methods Mol Biol       Date:  2009

2.  Impact of pesticides use in agriculture: their benefits and hazards.

Authors:  Md Wasim Aktar; Dwaipayan Sengupta; Ashim Chowdhury
Journal:  Interdiscip Toxicol       Date:  2009-03

3.  Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Authors:  Ryan R Wick; Louise M Judd; Claire L Gorrie; Kathryn E Holt
Journal:  PLoS Comput Biol       Date:  2017-06-08       Impact factor: 4.475

4.  A Rapid Bacteriophage DNA Extraction Method.

Authors:  Džiuginta Jakočiūnė; Arshnee Moodley
Journal:  Methods Protoc       Date:  2018-07-27

Review 5.  Plant health and its effects on food safety and security in a One Health framework: four case studies.

Authors:  David M Rizzo; Maureen Lichtveld; Jonna A K Mazet; Eri Togami; Sally A Miller
Journal:  One Health Outlook       Date:  2021-03-31

6.  Risk of Bacteriophage Therapeutics to Transfer Genetic Material and Contain Contaminants Beyond Endotoxins with Clinically Relevant Mitigation Strategies.

Authors:  James B Doub
Journal:  Infect Drug Resist       Date:  2021-12-23       Impact factor: 4.003

7.  PhageLeads: Rapid Assessment of Phage Therapeutic Suitability Using an Ensemble Machine Learning Approach.

Authors:  Kumarasan Yukgehnaish; Heera Rajandas; Sivachandran Parimannan; Ravichandran Manickam; Kasi Marimuthu; Bent Petersen; Martha R J Clokie; Andrew Millard; Thomas Sicheritz-Pontén
Journal:  Viruses       Date:  2022-02-08       Impact factor: 5.048

8.  Quality control of next-generation sequencing data without a reference.

Authors:  Urmi H Trivedi; Timothée Cézard; Stephen Bridgett; Anna Montazam; Jenna Nichols; Mark Blaxter; Karim Gharbi
Journal:  Front Genet       Date:  2014-05-06       Impact factor: 4.599

9.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

10.  A Roadmap for Genome-Based Phage Taxonomy.

Authors:  Dann Turner; Andrew M Kropinski; Evelien M Adriaenssens
Journal:  Viruses       Date:  2021-03-18       Impact factor: 5.048
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