| Literature DB >> 36098990 |
Ghobad Maleki1,2, Ahnjili Zhuparris1,2, Ingrid Koopmans1, Robert J Doll1, Nicoline Voet3,4, Adam Cohen1, Emilie van Brummelen1, Geert Jan Groeneveld1,2, Joris De Maeyer5.
Abstract
BACKGROUND: Facioscapulohumeral dystrophy (FSHD) is a progressive muscle dystrophy disorder leading to significant disability. Currently, FSHD symptom severity is assessed by clinical assessments such as the FSHD clinical score and the Timed Up-and-Go test. These assessments are limited in their ability to capture changes continuously and the full impact of the disease on patients' quality of life. Real-world data related to physical activity, sleep, and social behavior could potentially provide additional insight into the impact of the disease and might be useful in assessing treatment effects on aspects that are important contributors to the functioning and well-being of patients with FSHD.Entities:
Keywords: FSHD; classification; facioscapulohumeral dystrophy; machine learning; mobile phone; smartphone; wearables
Year: 2022 PMID: 36098990 PMCID: PMC9516375 DOI: 10.2196/31775
Source DB: PubMed Journal: JMIR Form Res ISSN: 2561-326X
Overview of all smartphone and wearable sensors used in this study and their respective extracted features.
| Device and sensor | Features | |
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| Accelerometer | Maximum magnitude of the acceleration: 98% |
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| Apps | Number of times an app is opened; amount of time app is open in foreground |
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| GPS | Total kilometers traveled per day; average kilometers traveled per trip; 95% maximum distance from home |
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| Google Places | Number of unique places visited; time spent at each unique location |
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| Calls | Number of outgoing, incoming, and missed calls; number of calls from known and unknown contacts |
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| Microphone | Percentage of time a human voice is present |
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| Watch step count | Total step count; mean steps per minute; mean steps per hour; maximum steps per hour |
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| Watch heart rate | Heart rate: 5%, 50%, and 95% ranges and SD of heart rate percentage of time spent in resting heart rate |
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| Watch sleep | Awake as well as light and deep sleep duration (minutes); number of awake as well as light and deep sleep periods; time to fall asleep (minutes) |
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| Watch physical activity | Soft, moderate, and hard activity duration |
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| Blood pressure monitor | Systolic and diastolic blood pressure |
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| Scale | Weight (kg); muscle mass (kg); bone mass (kg); body fat (%); body water (%) |
Demographics of patients with facioscapulohumeral dystrophy (FSHD) and controls without FSHD (N=58).
| Demographics | Patients with FSHD | Non-FSHD controls | |||
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| Female | 23 (61) | 11 (55) | ||
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| Male | 15 (39) | 9 (45) | ||
| Age (years), mean (SD; range) | 45 (14.5; 18-64) | 33 (12; 23-69) | |||
| Weight (kg), mean (SD; range) | 80 (16; 52-130) | 78 (18; 56-129) | |||
| BMI (kg/m2), mean (SD; range) | 26 (4; 20-44) | 25 (5; 19-35) | |||
| FSHD clinical score, mean (SD; range) | 5 (3; 1-13) | 0 (0; 0-0) | |||
| Timed Up-and-Go test (seconds), mean (SD; range) | 8.8 (35; 5-15.81) | 7.8 (1.55; 6-12.09) | |||
Figure 1Feasibility and perceived burden of remote monitoring in patients with facioscapulohumeral dystrophy using smartphone-based technologies.
Overview of data completeness. The data completeness shows what percentage of data was collected among the participants during the 42 days of the study; hence, in total, there should be 2436 daily instances and 232 weekly instances.
| Sensor | Feature | Overall data completion | |||
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| Patients with FSHDa | Controls without FSHD | ||
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| n (%) | N | n (%) | N |
| Microphone (smartphone) | Voice activation | 1181 (74) | 1596 | 688 (81.9) | 840 |
| Accelerometer (smartphone) | Phone acceleration | 1260 (78.95) | 1596 | 656 (78) | 840 |
| Google Places (smartphone) | Places | 1109 (69.49) | 1596 | 616 (73.33) | 840 |
| GPS (smartphone) | Relative location | 1373 (86.03) | 1596 | 785 (93.45) | 840 |
| App use (smartphone) | Use event aggregate | 1404 (87.97) | 1596 | 779 (92.74) | 840 |
| Withings blood pressure monitor | Blood pressure and heart rate | 1452 (91.15) | 1596 | 630 (75) | 840 |
| Withings scale | Body composition | 173 (75.88) | 228 | 88 (73.33) | 120 |
| Withings scale | Weight | 205 (89.91) | 228 | 108 (90) | 120 |
| Withings watch | Activity duration | 1505 (94.3) | 1596 | 744 (88.57) | 840 |
| Withings watch | Heart rate | 1181 (74) | 1596 | 588 (70) | 840 |
| Withings watch | Step count | 1491 (93.42) | 1596 | 708 (84.29) | 840 |
| Withings watch | Sleep summary | 1408 (88.22) | 1596 | 685 (81.55) | 840 |
aFSHD: facioscapulohumeral dystrophy.
Figure 2Selected features for classifying patients with facioscapulohumeral dystrophy and those without facioscapulohumeral dystrophy based on the composite data set using all 6 weeks of data and the least absolute shrinkage and selection operator–penalized logistic regression model. Unstandardized estimated coefficients indicate the direction of the association between the feature and the classification label.
Selected features for classifying patients with facioscapulohumeral dystrophy and controls without facioscapulohumeral dystrophy based on the complete 6-week composite data set. Unstandardized estimated coefficients indicate the direction of the association between the feature and the classification label.
| Feature category and feature | Unstandardized estimated coefficient | ||
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| Moderate activity duration | −0.04 | |
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| Time spent on recreational apps | −0.53 | |
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| Weight (kg) | −0.45 | |
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| Distance from home: 95% | 0.85 | |
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| Travel location | 1.00 | |
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| Home location | 0.67 | |
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| Unknown location | 0.53 | |
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| Health location | 0.29 | |
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| Public location | −0.12 | |
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| Social location | −0.14 | |
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| Commercial location | −0.94 | |
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| Average total sleep duration | 0.65 | |
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| Light sleep duration | −0.35 | |
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| Number of awake periods during a sleep session | −0.61 | |
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| Maximum total sleep duration | −0.69 | |
Summary of number of selected features and the respective performance metric for each of the data sets used to classify the patients with facioscapulohumeral dystrophy from the controls without facioscapulohumeral dystrophy.
| Data set | Number of selected features | Accuracy (%) | Sensitivity (%) | Specificity (%) | MCCa (%) |
| Composite | 15 | 93 | 100 | 80 | 85 |
| Biometric | 5 | 57 | 89 | 0 | −21 |
| Social | 10 | 79 | 90 | 60 | 52 |
| Physical activity | 13 | 71 | 78 | 60 | 38 |
aMCC: Matthews correlation coefficient.
Figure 3Performance of the incremental classification predictions for 3 classifiers (logistic regression, random forest, and support vector machine). The x-axis shows the time window for training the classification models starting from day 1 to day 42. The error bands represent the SD of the classification performance for the 5-fold cross-validation.
Figure 4Performance of 3 classifiers (logistic regression, random forest, and support vector machine) trained on the week 1 data and used to predict the classification diagnosis of the subsequent weeks of data. The error bands represent the SD of the classification performance for the 5-fold cross-validation.
Figure 5Shapley additive explanations (SHAP) summary plot based on a random forest classifier that was trained on the week 1 data. The x-axis shows the feature importance, where features are ranked in descending order. The y-axis shows the SHAP value that illustrates the direction of the association between the feature and facioscapulohumeral dystrophy severity. The color scheme reflects the probability of a participant being classified as a patient with facioscapulohumeral dystrophy.