Literature DB >> 36098861

Mortality predictors in patients with COVID-19 pneumonia: a machine learning approach using eXtreme Gradient Boosting model.

N Casillas1,2, A M Torres3, M Moret4, A Gómez4, J M Rius-Peris3,5, J Mateo3.   

Abstract

Recently, global health has seen an increase in demand for assistance as a result of the COVID-19 pandemic. This has prompted many researchers to conduct different studies looking for variables that are associated with increased clinical risk, and find effective and safe treatments. Many of these studies have been limited by presenting small samples and a large data set. Using machine learning (ML) techniques we can detect parameters that help us to improve clinical diagnosis, since they are a system for the detection, prediction and treatment of complex data. ML techniques can be valuable for the study of COVID-19, especially because they can uncover complex patterns in large data sets. This retrospective study of 150 hospitalized adult COVID-19 patients, of which we established two groups, those who died were called Case group (n = 53) while the survivors were Control group (n = 98). For analysis, a supervised learning algorithm eXtreme Gradient Boosting (XGBoost) has been used due to its good response compared to other methods because it is highly efficient, flexible and portable. In this study, the response to different treatments has been evaluated and has made it possible to accurately predict which patients have higher mortality using artificial intelligence, obtaining better results compared to other ML methods.
© 2022. The Author(s), under exclusive licence to Società Italiana di Medicina Interna (SIMI).

Entities:  

Keywords:  Artificial intelligence; COVID-19; Machine learning; Mortality; Prediction; SARS-CoV-2; XGB

Mesh:

Year:  2022        PMID: 36098861      PMCID: PMC9469825          DOI: 10.1007/s11739-022-03033-6

Source DB:  PubMed          Journal:  Intern Emerg Med        ISSN: 1828-0447            Impact factor:   5.472


Introduction

SARS-CoV-2 is a betacoronavirus belonging to Coronaviridae family, whose first detection was in December 2019 in Wuhan, China. Its pathogenesis is associated with extensive lung damage that generates a hypoxemic state in the individual who contracts it. It’s on the host where the activation of different inflammatory pathways occurs, presenting a cytokines overproduction and causing a chaotic inflammatory response and coagulation disorders. However, not all patients affected by SARS-CoV-2 will develop this severe form of the disease, since a high percentage of patients will suffer from a mild or even asymptomatic illness [1]. On the one hand, the presence of a pro-inflammatory state generated edema and cellular infiltration at the lung level, producing a diffuse interstitial pattern and as consequence development of acute respiratory distress syndrome (ARDS) [2]. Elevation of certain circulating cytokines has been observed such as: interleukin-6 (Il-6), interlukine-2 (Il-2), Tumor necrosis factor-alpha (TNF-alpha), and colonies (G-CSF). Il-6 play an essential role in the pathogenesis of the respiratory syndrome due to SARS-CoV-2 since, in addition to being a pro-inflammatory cytokine, it is involved in modulating the initiation of coagulation, increasing the platelet and leukocyte adhesion. In addition, it has been proposed as a prognostic marker of the disease and predictor of long-term pulmonary fibrotic sequelae in patients with persistently elevated Il-6 [3-5]. That is why drugs that targeted this interleukin or its cellular receptors, such as tocilizumab or baricitinib, were quickly used. In a retrospective multicentre study whose main objective was the need for intubation and/or mortality, the use of tocilizumab monotherapy was compared with corticosteroids at intermediate doses, pulses of corticosteroids or the combination of pulses of corticosteroids with tocilizumab, without finding significant differences between the various arms [6-8]. Although it is true, that the initiation of high doses of corticosteroids was conditioned to the development of the hyperinflammatory state, which could translate into a late initiation of immunosuppressive treatment [9]. Regarding, studies published with baricitinib in combination with remdesivir or intravenous corticosteroids, such as Dexamethasone or Methylprednisolone, have shown benefits in terms of shorter recovery time in those with high-flow O2 supplements and non-invasive mechanical ventilation (NIMV), without evaluating its effect in monotherapy. Initially, steroids have been evaluated in multiple studies due to their anti-inflammatory activity whose objective was the cessation of the pro-inflammatory cascade whose direct consequence was ARDS, concluding its no effect on the reduction of mortality although it did decrease hypoxia and the risk of respiratory failure. [10-13]. There are mixed results regarding the use of corticosteroids. However, the latest publications conclude that the use of corticosteroids has shown a reduction in mortality in moderate-severe patients who require supplemental O2 or invasive mechanical ventilation (IMV). While in mild patients a harmful effect cannot be ruled out [14]. On the other hand, SARS-CoV-2’s high mortality is closely related to the occurrence of coagulation disorders. Disseminated intravascular coagulation (DIC) is the most frequently alteration detected. At the beginning of SARS-CoV-2 infection, a hypercoagulatory state occurs with an increase in macro- and micro-vascular thrombotic events, preferably venous, although they have also been observed at the arterial level. However, the consumption of platelets as well as coagulation factors generates a chaotic state that favors the appearance of bleeding events that have been carried out with an increase in mortality in critically ill patients. Several studies have confirmed that the intensification of anticoagulant treatment has not been related to a lower incidence of thrombosis, while it has generated an increase in bleeding events [15]. While other authors argue that prophylactic anticoagulation doses are insufficient in high-risk patients [16]. Certainly, it is necessary to perform a correct initial evaluation of the coagulation status of patients as well as to carry out periodic analytical follow-ups during hospitalization with: prothrombin time (PT), thromboplastin time (APTT), platelets, antithrombin (AT), D-dimer (DD), and degradation products of the fibrin (FDP) [17-21]. DD has been one of the most studied parameters in the COVID-19 population. It’s a fibrin degradation product that results from both the conversion of fibrinogen to fibrin by thrombin and by the cross-linking of fibrin by activated factor XIII and by the degradation of fibrin by plasmin. It is therefore part of coagulation and the activation of fibrinolysis, and for this reason it can be elevated in thrombotic and haemorrhagic events [22]. Various studies have reported an elevated level of DD in a large proportion of patients and a progressive elevation has even been observed in those patients who develop ARDS and therefore a more serious disease. During the early days of the pandemic, DD levels marked the start of treatment with low-weight heparins at anticoagulant doses to prevent thrombus formation in these patients. This led to the appearance of haemorrhagic events, which could be related to the situation of clinical severity such as a higher dosage of anticoagulant treatment. Therefore, DD can be a predictor of severity, even mortality. Our work is based on the classification of patients with COVID-19 and the objective has been to evaluate the response to the different treatments and to predict which patients were at higher risk of developing severe respiratory distress syndrome. For this we have implemented an extreme gradient boosting algorithm (XGB), which in addition to being a supervised algorithm, is a variant of gradient boosting and which aims to increase both speed as running in ML model. It is a decision tree based ML algorithm that uses a gradient reinforcement framework. The XGB implementation provides several advanced features for model fitting, algorithm improvement, and computing environments [23, 24]. Therefore, this algorithm was developed to create a new tool that allows doctors to make decisions based on real clinical data. ML techniques can be valuable for the study of COVID-19, especially because they can uncover complex patterns in large data sets [25-27]. The results obtained by the proposed method confirmed that this system classifies COVID-19 patients with greater precision than other ML methods.

Material

Study design and population

This retrospective observational study includes patients older than 15 years, thus excluding the paediatric population who were admitted to the Virgen de la Luz Hospital in Cuenca. All patients included in this study were those with a confirmed diagnosis for COVID-19 through polymerase chain reaction (RT-PCR) by nasopharyngeal exudate and/or Rapid test of IgM/IgG antibodies admitted in a period comprised between March 15 and April 30 [28, 29].In addition to the epidemiological context in which we found ourselves, was taken into account. Secondly, the demographic characteristics as well as the presence of comorbidities of the sample were collected in Table 1, as well as the clinical, analytical and radiological presentation [1, 30–32]. An observational study was carried out where it was grouped into two groups based on the objective variable that was mortality. A group was obtained “Case patients” where were those patients who finally died during admission and the control group who survived.
Table 1

Demographic characteristics, comorbidities, clinical, and laboratory findings on admission

All adults (n 151)Case patients (n 53)Controls (n 98)P value
Age, median, year69 (28–97)71 (49–92)67 (28–97)0.536
Sex<0.0001
-Male93 (62%)43 (46%)50 (54%)
-Female58 (38%)10 (17%)48 (83%)
Comorbidities
-High Blood Pressure82 (54%)32 (60%)50 (51%)0.193
-Dyslipemia58 (38%)24 (45%)34 (35%)0.146
-Diabetes42 (28%)25 (48%)17 (18%)<0.0001
-Coagulopathy disease35 (23%)17 (32%)18 (18%)0.046
-Hyperuricemia27 (18%)11(21%)16 (16%)0.321
-COPD*15 (10%)7 (13%)8 (8%)0.238
-OSA*15 (10%)7 (13%)8 (8%)0.238
-Dementia12 (8%)6 (11%)6 (6%)0.206
-Asthma4 (2%)2 (4%)2 (2%)0.439
-Autoimmune disease7 (4%)1 (2%)6 (6%)0.226
-Active Cancer3 (2%)2 (4%)1 (1%)0.286
BMI0.011
-Normal17 (11%)4 (8%)13 (13%)
-Overweight I11 (7%)4 (8%)7 (8%)
-Overweight II33 (22%)6 (11%)27 (27%)
-Obesity I19 (12%)3 (6%)16 (16%)
-Obesity II15 (10%)7 (13%)8 (8%)
-Obesity III3 (2%)1 (2%)2 (2%)
Clinical debut
-Dyspnoea114 (75%)45 (85%)69 (70%)0.035
-Cough111 (73%)41 (77%)70 (71%)0.278
-Fever95 (63%)35 (66%)60 (61%)0.827
-Diarrhoea31 (21%)9 (17%)22 (22%)0.283
-Nausea and vomiting16 (10%)3 (6%)13 (13%)0.126
-Neurological symptoms (anosmia/ageusia)13 (9%)4 (7%)9 (9%)0.495
Initial laboratory tests, median
-Hemoglobin (g/dl)13.5613.6713.50.361
-Platelets (k/mcl)1921891940.233
-Lymphocytes (k/mcl)0.580.390.680.360
-Fibrinogen (mg/dl)4084024100.750
-D-dimer (ng/ml)19834743676<0.0001
-Ferritin (ng/ml)1319174811120.610
-Creatinine (mg/dl)1.271,421.180.346
-Albumin (g/dl)4.445.223.430.102
-Creatine-kinase (IU/l)2373311880.028
-Lactate dehydrogenase (IU/l)7257786970.959
-Reactive C protein (mg/l)
1371711180.194
COVID-19 Treatment
-Antibiotics139 (92%)50 (94%)89 (91%)0.692
-Azithromycin128 (85%)42 (79%)86 (88%)0.095
-Hydroxychloroquine118 (78%)37 (70%)81 (83%)0.042
-Antiviral
Lopinavir-ritonavir43 (28%)16 (30%)27 (27%)0.212
Darunavir-cobicistat30 (20%)14 (26%)16 (16%)0.266
Remdesivir0 (0%)0 (0%)0 (0%)-
-Steroids93 (61%)37 (70%)56 (57%)0.087
Pulse80 (53%)33 (62%)47 (48%)0.065
-Immunosuppressant
Tocilizumab13 (9%)8 (15%)5 (5%)0.105
Baricitinib2 (1%)1 (2%)1 (1%)0.302
Cyclosporine6 (4%)3 (5%)3 (3%)0.423
-N-acetylcysteine66 (44%)27 (51%)39 (40%)0.126
-Anticoagulant
Prophylactic dose66 (44%)12 (23%)54 (55%)<0.0001
Intermediate dose59 (39%)29 (55%)30 (31%)0.003
Therapeutic dose16 (10%)9 (17%)7 (7%)0.061
Coagulation disorders during admission13 (7%)8 (15%)5 (5%)
-Bleeding6 (54%)4 (57%)2(40%)0.114
Major bleeding2 (33%)2 (50%)0 (0%)
-Thrombosis7 (63%)4 (57%)3(60%)0.358
Pulmonary embolism (PE)4 (57%)3 (75%)1 (33%)
Deep venous thrombosis (DVT)2 (28%)0 (0%)2 (67%)
Both (PE + DVT)1 (14%)1 (25%)0 (0%)

Therapy administered and complications during hospitalization COPD Chronic Obstructive Lung Disease, OSA Obstructive sleep apnoea

Symptom and vital signs that were taken into account: Cough, expectoration, arthralgias o myalgia, asthenia and anorexia, dyspnoea, fever >37.5, saturation (<93%), pulse and respiratory rate. Analytical parameters and their levels upon admission to the emergency room: Platelets (k/mcl) <150, Leukocytes (k/mcl) low or normal levels, Lymphocytes (k/mcl) <1, D-dimer (ng/ml) >1000, Ferritin (ng/ml) >1000, Creatine-kinase (IU/l) >150, Lactate dehydrogenase (IU/l) >450 and Reactive C protein (mg/l) >100. Chest X-ray with the presence of unilateral or bilateral interstitial infiltrates. For this, the radiographic evaluation scale ERVI was used. Demographic characteristics, comorbidities, clinical, and laboratory findings on admission Therapy administered and complications during hospitalization COPD Chronic Obstructive Lung Disease, OSA Obstructive sleep apnoea

Biomarkers studied

Upon admission to the Emergency Department, patients with symptoms for COVID-19 underwent laboratory tests and radiography, which determined levels of platelets, leukocytes, lymphocytes, prothrombin and thromboplastin times, fibrinogen, DD, c-reactive protein (CRP), procalcitonin (PCT), lactate dehydrogenase (LDH) and pressure of oxygen in arterial blood (PAO2) was performed prior to any treatment [20, 33]. 24 h after admission, the analysis was completed, extracted in the Emergency Department, with profiles of liver, kidney, and ferritin function, etc. The previously mentioned parameters were collected in Table 1. In addition to these parameters, other parameters such as albumin, total proteins, creatinine, ions (sodium, potassium, total or ionic calcium) were included [34, 35]. During hospital admission, analytical controls were carried out depending on the clinical evolution of the patient and the physician in charge of the case. Our database included both the initial values obtained in the emergency room or 24 h after hospitalization, and the worst value presented during admission.

Methods

In our study, the supervised learning algorithm eXtreme Gradient Boosting (XGBoost) was used due to its good response compared to other methods and because it is highly efficient, flexible and portable. XGBoost provides parallel tree reinforcement with fast and accurate resolution mode. Five widely known machine learning (ML) methods will be used to train patient classification models into two groups. The methods included DT [36-38], GNB [37, 39], KNN [36, 37, 40, 41], SVM [36, 37, 42, 43] and the proposed XGB method [23, 24] and were implemented using MatLab statistical software and machine learning (Matlab 2020a). Initially we split our data into 70% for training and the rest for testing. A total of 5 k-fold was cross-validated. In addition, machine learning techniques often have one or more hyperparameters that allow a different algorithm adjustment during the training process. The different values of these hyperparameters (number of splits, learners, neighbours, distance metric, distant weight, kernel, box constraint level, multiclass method, etc.) for each method lead to algorithms with different prediction performances to obtain the best possible performance. To optimize these hyperparameters for each ML technique used in this study, each model was trained with a Bayesian optimization approach. Bayesian optimization aims to estimate which hyperparameter settings would maximize algorithm performance from previous attempts, based on the assumption that there is a relationship between the various hyperparameters, and the performance achieved by the algorithm. The hyperparameters adjusted for XGB were maximum depth, gamma, learning rate, and n estimators. Patient data was not shared between the training and testing subsets to prevent the algorithm from being tested with the same patient data used for training. Figure 1 shows the process followed to carry out the complete study. As can be seen, the subjects to be studied were selected first. Once the database was created, the training and validation of the implemented Machine Learning methods was carried out.
Fig. 1

Training and validation scheme for machine learning methods

Training and validation scheme for machine learning methods The area under the AUC and the balanced precision were used as performance measures to be maximized. 100 repetitions were used to calculate the mean and standard deviation values of the different calculated results, given the stochastic nature of the boot and machine learning in all simulations. The experiments were repeated uniformly at random to reduce the effects of noise in the data, calculate accurate AUC values, and obtain statistically significant results.

Results

This section describes the results obtained with the patient records used for training and validation in COVID-19 pneumonia classification. The performance of the proposed system has been compared with different classification ML methods accepted in the scientific community. The results obtained with both test and training records in the classification of mortality in COVID-19 patients are discussed below. It should be noted that the performance of the proposed system has been compared with different ML classification methods widely used in the literature.

Comparison between Case patient’s vs Control group

A total of 151 confirmed or highly suspected COVID-19 patients were collected during the previously referred study period. The median age of the sample was 69 (28–97) years, 53 died during hospital admission classifying them within the group Case patient’s vs 98 who survived (35% vs 65%), being predominantly men (62% vs 38%) Both groups Case patient’s vs control were compared to evaluate the differences that influenced the clinical evolution. Among the characteristics of the sample collected in Table 1, it should be noted that comorbidities were homogeneously distributed between both groups, except for Diabetes Mellitus (48% vs 18%, p = <0.0001) and previous coagulopathies (32% vs 18%, p = 0.046) that were found more frequently in the Case patients’ group. Regarding the symptoms referred to their admission, dyspnoea was described more frequently in the Case patient’s (85% vs 70%, p = 0.035), however no significant differences were observed in terms of fever or extrapulmonary symptoms such as gastrointestinal or neurological. Initial blood tests showed significantly elevated levels of DD (4743 vs 676, p 0.0001) and creatine-kinase (CK, 331 vs 188, p = 0.028). However, no notable differences were found in terms of platelet, lymphocyte, ferritin or LDH levels. On the other hand, the treatments received during the hospital stay did not show clear differences between the two groups. It should be noted the differences observed in the dosage of anticoagulant treatment, with the use of prophylactic doses being observed more frequently (23% vs 55%, p 0.0001) in the control group, compared to a higher frequency of intermediate doses (55% vs 31%, p 0.003) used in the Case patients- group.

ML analysis

The most important analytical predictors of mortality were the initial DD, platelets, lymphocytes levels, LDH, CRP, PAO2 and prothrombin activity collected upon admission to hospital. Furthermore, there were other powerful predictors of mortality among the comorbidities of the patients, such as asthma, CODP and OSA, history of hyperuricemia. The presence of these comorbidities conditioned the clinical course and outcome of the disease. Other strong predictors were active cancer with chemotherapy treatment, autoimmune diseases, and lung diseases which have been collected in the Fig. 2. In addition, critical events that occurred during admission as well as analytical values during hospital stay were included in the analysis. It was observed that critical events such as bleeding as well as the alterations maintained in the levels of ferritin, CRP, LDH, prothrombin activity were powerful predictors of mortality in patients with COVID-19 pneumonia. Another important variable in the prediction of mortality in our sample was the sodium level during hospital period. The predictor variables were evaluated by different Machine learning classification methods for the prediction of mortality, among which we find XGB, KNN, DT, SVM and GNB collected in Table 2.
Fig. 2

Mortality predictors in COVID-19. This figure shows the different parameters that have been identified as predictors of mortality. Section A presents the initial laboratory parameters, section B comorbidities, and section C laboratory evolution and complications during hospital admission of COVID-19 patients

Table 2

The table displays the mean values and standard deviation of balanced accuracy, recall, precision, AUC, score, MCC, DYI and Kappa score of the ML system and the proposed model evaluated in this work

MethodBalanced accuracy (%)RecallPrecisionAUC
GNB77,3277,4176,770,77
SVM78,8980,0179,920,80
DT82,6682,7682,080,82
KNN85,8485,9485,230,85
XGB93,2293,3392,550,93
MethodF1 scoreMCCDYIKappa
GNB77,0968,6177,3268,84
SVM79,7871,0080,0271,24
DT82,4273,3582,6773,60
KNN85,5976,1885,8576,43
XGB92,9482,7293,2282,99
On the one hand, the receiver operating characteristic (ROC) has been applied to compare the classification capability of the proposed system with other ML methods as can be seen in Section A of Fig. 3. By means of sensitivity and specificity, we can represent the results obtained among deceased patients versus survivors. We observed that there were clear differences in power between the different methods for predicting mortality. Also, Table 2 shows diverse parameters of different classification methods such as SVM, DT, GNB, KNN and the proposed system for classification of COVID-19 patients as well as healthy patients. The SVM and GNB based systems obtain lower classification values than other methods with accuracy values close to 79%. In turn, DT and KNN improve this value reaching 86%. About the proposed XGB method, the values obtained were much higher than those of the other methods, reaching an accuracy of close to 94%. It is true that the KNN and DT methods are close in their Precision and Recall values to the proposed method, but they do not achieve the same percentage. SVM and GNB achieve values close to 82% in the F1 score value but none of these achieve the results obtained by the proposed method. For the evaluation of these methods, values of balanced accuracy, recovery, precision and F1 score are used, which allows us to select the best method that allows obtaining a precision close to 95%. XGB proved to have a strong performance for prediction compared to other methods as SVM or GNB for which the AUC was 0.8 vs 0.77 respectively. The 7.37% improvement obtained with XGB in the DYI classifies it as the best of the studied methods.
Fig. 3

Section A: ROC curves for the five assessed machine learning predictors. Section B: The figure shows the radar plot of the training phase (left) and test (right) for the prediction of mortality in COVID-19 patients

Mortality predictors in COVID-19. This figure shows the different parameters that have been identified as predictors of mortality. Section A presents the initial laboratory parameters, section B comorbidities, and section C laboratory evolution and complications during hospital admission of COVID-19 patients The table displays the mean values and standard deviation of balanced accuracy, recall, precision, AUC, score, MCC, DYI and Kappa score of the ML system and the proposed model evaluated in this work On the other hand, to check the performance of the proposed XGB system in the classification of the two classes analysed, other parameters widely used also in the literature such as AUC, MCC, DYI and Kappa index were used. For this check, one of the most reliable statistical indices available, the Matthews Correlation Coefficient (MCC), was used. This coefficient produces a high score only if the prediction performed well in all four categories of the matrix. Results in all four categories of the confusion matrix (true positives, false negatives, true negatives and false positives), proportionally to the size of the positive items and the size of the negative items in the dataset. Again, the proposed method achieves a higher MCC value (closer to 1) compared to the other methods analysed. As can been observed in Table 2, DT and KNN are the best performers compared to the others but do not achieve the XGB value. Another parameter used was the Kappa index where again XGB outperforms KNN and DT which are the best performing methods. XGB method obtains a better score in most of the metrics, which indicates that it is a balanced model. All models score high on the training data set, however they go down with the test data, showed on Section B of Fig. 3. In the case of XGB, it behaves similarly in both data sets, confirming it as the best model among those compared. Section A: ROC curves for the five assessed machine learning predictors. Section B: The figure shows the radar plot of the training phase (left) and test (right) for the prediction of mortality in COVID-19 patients

Discussion

This study aimed to describe the usefulness of new machine learning algorithms in the search for data patterns and to identify the relationships between all fields. Machine Learning allows us to predict the mortality of the population of patients with Pneumonia due to COVID-19 in a way that allows clinicians to anticipate those patients at risk of developing an acute distress syndrome associated with the disease, which could translate into a reduction so much of mortality. An initial evaluation of comorbidities, clinical and laboratory presentation was carried out using biochemical and haematological parameters at hospital admission that could later be used as predictors. The results found show a clear association between initial alterations, mainly in analytical parameters such as levels of DD, platelets, CRP, LDH, lymphocytes, PAO2 and prothrombin activity with mortality, translating into a state of hyperinflammation initial in the Case patients- group, being independent of the treatments received during their hospitalization. Cell activation after tissue damage generates an inflammatory response with expression of different tissue factors that will produce alterations in coagulation times and in the activation of prothrombin, generating hypercoagulatory states and increased risk of thrombosis. Doctors use the DD level to detect thrombosis, however it can be elevated in other situations such as bleeding, cancer or even pregnancy among others. Its elevation in COVID-19 patients has been widely studied, and there are multiple causes that can generate it, including inflammation, endothelial dysfunction, hypoxia, also age and comorbidities. This elevation has been related to an increase in mortality, and therefore its initial detection as well as its follow-up is necessary. During the hospital stay, a worsening of the levels of Ferritin, CRP, LDH and prothrombin activity was observed, as well as the appearance of haemorrhagic events were associated with higher mortality [33, 44]. In addition, the decrease in lymphocyte count has been associated with an increased risk of serious disease. However, it was not a predictor of mortality during follow-up in our sample. Other authors have observed that a lower initial lymphocyte count as well as a sustained decrease is an early predictor of severe disease [45]. On the other hand, the burden of comorbidities presented by the patients also had a greater influence on mortality. Patients with a high burden of comorbidities are subjected to chronic stress that generates a decrease in immunity and therefore a greater susceptibility to infections. Also, the presence of cardiovascular risk factors such as hypertension or diabetes conditions prior vascular damage, which will entail a greater risk of acute cardiovascular events during the infectious process. In our study, the comorbidities with the greatest association were mainly presented by patients with active cancer and undergoing chemotherapy, despite having a small sample concordance with the results obtained in other studies carried out. Patients with active solid and hematological cancers, although mainly the latter, have a higher risk of developing a more severe disease from COVID-19 and a higher mortality from it [46]. Although the differences between treatment with conventional chemotherapy vs biological therapies with monoclonal antibodies were not taken into account in our study. On the other hand, previous pulmonary pathology was other predictor variables for mortality. Although the frequency of these comorbidities in the sample studied was low, we cannot rule out that the frequency of these diseases is conditioned by greater social isolation as it is considered high risk during the first wave. Most of them were patients <65 years of age, with other associated comorbidities, with mortality in the COPD group of 46%. Therefore, although the incidence was low, these patients have a higher risk of developing severe disease and higher mortality [47]. This is mainly due to lower resistance to the virus. Several studies have observed that lack of expression of angiotensin-converting enzyme 2 (ACE2) confers protection against SARS-CoV-2 infection. ACE2 is used by the virus to enter the cell and spread, and it is overexpressed in smokers and COPD patients and may be an aggravating factor to develop a more serious disease. In addition, these patients have pre-existing lung damage that, associated with a chronic inflammatory state, will condition a barrier and deficient immunity against the virus. Regarding the history of hyperuricemia, it was associated with higher mortality. Elevated uric acid has already been described in various lung diseases and in COVID-19 patients. However, the role of uric acid is controversial since it can act as an antioxidant as well as an immunity stimulant. On the one hand, the release of uric acid deposits secondary to tissue damage generates their elevation in the bloodstream, thus exerting an immune stimulus and triggering a generalized inflammation as a consequence of the increased production of cytokines such as Il-1, Il-6 and TNF-alpha. However, the lowered levels of uric acid could be related to a loss of its antioxidant and immunomodulatory power in situations of significant oxidative stress. Various authors have investigated in this regard, Bo Chen et al. [48] presented a cohort of cases where an association was observed between U-shaped uric acid levels, that is, high uric acid levels were associated with higher mortality and need for IMV, while low uric acid levels increased the risk of death, admission to ICU and IMV. Similar results regarding hypouricemia were observed by In’s Dufour et al. [49] on a cohort of ICU patients who presented lower uric acid levels upon admission to the unit. Further studies are needed to clarify the behaviour of uric acid and its pathophysiology during acute SARS-CoV-2 infection. Table 3 presents a summary of different techniques that have been used to predict mortality in COVID-19 patients. As can be seen, the proposed model achieves more accurate values. The results show that the proposal can effectively improve the performance of other classification methods. Due to this, the proposed system may be a useful tool to classify patients with SARS-CoV-2 Pneumonia according to risk.
Table 3

The table shows the results of the comparison of the proposed method and the various published methods for the prediction of mortality in COVID-19 patients

AuthorClassifierACCAUC\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$F_{1}$$\end{document}F1 value (%)
Li et al. [50]LASSO>80
Hu et al. [51]AUROCs88
Mele et al. [52]PM2.577.8
Di Castelnuovo et al. [53]RF83.490.4
ProposedXGB93.229392.94
The table shows the results of the comparison of the proposed method and the various published methods for the prediction of mortality in COVID-19 patients Machine Learning allows obtaining greater diagnostic precision with a smaller sample size but a large number of data established, thus improving the results obtained by traditional statistical methods. These results allow the clinician Obtain a more sensitive tool for the identification of higher risk factors that allows more energetic initial action. Artificial intelligence is in continuous progress, in recent months several studies have been published on its validity in the evaluation of CT images in patients with COVID-19 pneumonia, reaching a sensitivity and specificity > 90%, and greatly exceeding those results obtained by trained medical personnel.

Conclusion

In conclusion, using artificial intelligence techniques, we have been able to obtain highly reliable predictive variables, being able to detect those patients with the highest risk and establish early measures that allow modifying the course of the disease. Within the numerous factors influence the mortality of patients who develop COVID-19 pneumonia, we highlight D-dimer, platelets, CRP, LDH, lymphocytes, PAO2 and prothrombin activity, as well as the changes kept the hospitalization. The development of bleeding because of this pro-inflammatory state has also been associated with high mortality. Therefore, knowledge of the clinical characteristics of patients affected by SARS-CoV-2 and their evolution is of crucial importance for the development of Clinical Practice Guidelines that facilitate decision-making for physicians.
  24 in total

1.  Are the steroids a blanket solution for COVID-19? A systematic review and meta-analysis.

Authors:  Soumya Sarkar; Puneet Khanna; Kapil D Soni
Journal:  J Med Virol       Date:  2020-09-28       Impact factor: 2.327

2.  Association Between Administration of Systemic Corticosteroids and Mortality Among Critically Ill Patients With COVID-19: A Meta-analysis.

Authors:  Jonathan A C Sterne; Srinivas Murthy; Janet V Diaz; Arthur S Slutsky; Jesús Villar; Derek C Angus; Djillali Annane; Luciano Cesar Pontes Azevedo; Otavio Berwanger; Alexandre B Cavalcanti; Pierre-Francois Dequin; Bin Du; Jonathan Emberson; David Fisher; Bruno Giraudeau; Anthony C Gordon; Anders Granholm; Cameron Green; Richard Haynes; Nicholas Heming; Julian P T Higgins; Peter Horby; Peter Jüni; Martin J Landray; Amelie Le Gouge; Marie Leclerc; Wei Shen Lim; Flávia R Machado; Colin McArthur; Ferhat Meziani; Morten Hylander Møller; Anders Perner; Marie Warrer Petersen; Jelena Savovic; Bruno Tomazini; Viviane C Veiga; Steve Webb; John C Marshall
Journal:  JAMA       Date:  2020-10-06       Impact factor: 56.272

3.  Tocilizumab for severe COVID-19: a systematic review and meta-analysis.

Authors:  Shao-Huan Lan; Chih-Cheng Lai; Hui-Ting Huang; Shen-Peng Chang; Li-Chin Lu; Po-Ren Hsueh
Journal:  Int J Antimicrob Agents       Date:  2020-07-23       Impact factor: 5.283

4.  Remdesivir for the Treatment of Covid-19 - Final Report.

Authors:  John H Beigel; Kay M Tomashek; Lori E Dodd; Aneesh K Mehta; Barry S Zingman; Andre C Kalil; Elizabeth Hohmann; Helen Y Chu; Annie Luetkemeyer; Susan Kline; Diego Lopez de Castilla; Robert W Finberg; Kerry Dierberg; Victor Tapson; Lanny Hsieh; Thomas F Patterson; Roger Paredes; Daniel A Sweeney; William R Short; Giota Touloumi; David Chien Lye; Norio Ohmagari; Myoung-Don Oh; Guillermo M Ruiz-Palacios; Thomas Benfield; Gerd Fätkenheuer; Mark G Kortepeter; Robert L Atmar; C Buddy Creech; Jens Lundgren; Abdel G Babiker; Sarah Pett; James D Neaton; Timothy H Burgess; Tyler Bonnett; Michelle Green; Mat Makowski; Anu Osinusi; Seema Nayak; H Clifford Lane
Journal:  N Engl J Med       Date:  2020-10-08       Impact factor: 91.245

Review 5.  Coagulation and anticoagulation in COVID-19.

Authors:  Tarik Hadid; Zyad Kafri; Ayad Al-Katib
Journal:  Blood Rev       Date:  2020-10-08       Impact factor: 8.250

6.  Dexamethasone treatment for the acute respiratory distress syndrome: a multicentre, randomised controlled trial.

Authors:  Jesús Villar; Carlos Ferrando; Domingo Martínez; Alfonso Ambrós; Tomás Muñoz; Juan A Soler; Gerardo Aguilar; Francisco Alba; Elena González-Higueras; Luís A Conesa; Carmen Martín-Rodríguez; Francisco J Díaz-Domínguez; Pablo Serna-Grande; Rosana Rivas; José Ferreres; Javier Belda; Lucía Capilla; Alec Tallet; José M Añón; Rosa L Fernández; Jesús M González-Martín
Journal:  Lancet Respir Med       Date:  2020-02-07       Impact factor: 30.700

Review 7.  COVID-19, cytokines and immunosuppression: what can we learn from severe acute respiratory syndrome?

Authors:  Piercarlo Sarzi-Puttini; Valeria Giorgi; Silvia Sirotti; Daniela Marotto; Sandro Ardizzone; Giuliano Rizzardini; Spinello Antinori; Massimo Galli
Journal:  Clin Exp Rheumatol       Date:  2020-03-22       Impact factor: 4.473

Review 8.  Towards treatment planning of COVID-19: Rationale and hypothesis for the use of multiple immunosuppressive agents: Anti-antibodies, immunoglobulins, and corticosteroids.

Authors:  Amene Saghazadeh; Nima Rezaei
Journal:  Int Immunopharmacol       Date:  2020-05-08       Impact factor: 4.932

9.  Baricitinib improves respiratory function in patients treated with corticosteroids for SARS-CoV-2 pneumonia: an observational cohort study.

Authors:  Jose Luis Rodriguez-Garcia; Gines Sanchez-Nievas; Juan Arevalo-Serrano; Cristina Garcia-Gomez; Jose Maria Jimenez-Vizuete; Elisa Martinez-Alfaro
Journal:  Rheumatology (Oxford)       Date:  2021-01-05       Impact factor: 7.580

10.  Characteristics of coagulation alteration in patients with COVID-19.

Authors:  Hong-Chun Luo; Cheng-Yan You; Si-Wei Lu; Yue-Qiang Fu
Journal:  Ann Hematol       Date:  2020-10-20       Impact factor: 4.030

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1.  Progress and prospects for artificial intelligence in clinical practice: learning from COVID-19.

Authors:  Pietro Ferrara; Sebastiano Battiato; Riccardo Polosa
Journal:  Intern Emerg Med       Date:  2022-09-05       Impact factor: 5.472

  1 in total

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