Literature DB >> 36098529

Genomic Characterization of the Cluster CZ4 Gordonia terrae Phage Oregano.

Hannah Lembree1,2, Oyku Goktug1, Dorian Royal1, Alexander Russell1, Annika Savage1,2, Makayla Sisco1, Maple Waltner1,2, Veronica Chun1, Melody N Neely1, Sally D Molloy1,2.   

Abstract

Oregano is a novel cluster CZ4 bacteriophage isolated from the soil using the bacterial host Gordonia terrae. The Oregano genome is 47,575 bp long and encodes two tyrosine integrases and a toxin/antitoxin system. It shares an immunity repressor with both Gordonia and Mycobacterium phages that spans 7 clusters.

Entities:  

Year:  2022        PMID： 36098529      PMCID： PMC9584220          DOI： 10.1128/mra.00679-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  18 in total

1.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

2.  Purification of nucleic acids by extraction with phenol:chloroform.

Authors:  Joseph Sambrook; David W Russell
Journal:  CSH Protoc       Date:  2006-06-01

Review 3.  The PIN-domain ribonucleases and the prokaryotic VapBC toxin-antitoxin array.

Authors:  Vickery L Arcus; Joanna L McKenzie; Jennifer Robson; Gregory M Cook
Journal:  Protein Eng Des Sel       Date:  2010-10-29       Impact factor: 1.650

4.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

5.  Consed: a graphical editor for next-generation sequencing.

Authors:  David Gordon; Phil Green
Journal:  Bioinformatics       Date:  2013-08-31       Impact factor: 6.937

6.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

7.  GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.

Authors:  John Besemer; Mark Borodovsky
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

8.  The HHpred interactive server for protein homology detection and structure prediction.

Authors:  Johannes Söding; Andreas Biegert; Andrei N Lupas
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

9.  Bacteriophages of Gordonia spp. Display a Spectrum of Diversity and Genetic Relationships.

Authors:  Welkin H Pope; Travis N Mavrich; Rebecca A Garlena; Carlos A Guerrero-Bustamante; Deborah Jacobs-Sera; Matthew T Montgomery; Daniel A Russell; Marcie H Warner; Graham F Hatfull
Journal:  mBio       Date:  2017-08-15       Impact factor: 7.867

10.  Genomic diversity of bacteriophages infecting Microbacterium spp.

Authors:  Deborah Jacobs-Sera; Lawrence A Abad; Richard M Alvey; Kirk R Anders; Haley G Aull; Suparna S Bhalla; Lawrence S Blumer; David W Bollivar; J Alfred Bonilla; Kristen A Butela; Roy J Coomans; Steven G Cresawn; Tom D'Elia; Arturo Diaz; Ashley M Divens; Nicholas P Edgington; Gregory D Frederick; Maria D Gainey; Rebecca A Garlena; Kenneth W Grant; Susan M R Gurney; Heather L Hendrickson; Lee E Hughes; Margaret A Kenna; Karen K Klyczek; Hari Kotturi; Travis N Mavrich; Angela L McKinney; Evan C Merkhofer; Jordan Moberg Parker; Sally D Molloy; Denise L Monti; Dana A Pape-Zambito; Richard S Pollenz; Welkin H Pope; Nathan S Reyna; Claire A Rinehart; Daniel A Russell; Christopher D Shaffer; Viknesh Sivanathan; Ty H Stoner; Joseph Stukey; C Nicole Sunnen; Sara S Tolsma; Philippos K Tsourkas; Jamie R Wallen; Vassie C Ware; Marcie H Warner; Jacqueline M Washington; Kristi M Westover; JoAnn L Whitefleet-Smith; Helen I Wiersma-Koch; Daniel C Williams; Kira M Zack; Graham F Hatfull
Journal:  PLoS One       Date:  2020-06-18       Impact factor: 3.240
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