Literature DB >> 36094211

Draft Genome Sequence of an Enterotoxigenic Escherichia coli Strain Carrying Genes for Colonization Surface Antigen 13 and a Heat-Labile Toxin.

Samuel M Njoroge1,2,3, Laure F Madé4, Astrid von Mentzer5,6, Benard W Kulohoma1, Timothy K Kamanu7, Tom T Ouko3, John Kiiru3,8, Melissa J Ward9,10, Nicholas R Thomson6, Eric M Fèvre2,4, Mark Woolhouse10,11, Samuel Kariuki12.   

Abstract

Here, we report the draft genome of ESEI_597, an enterotoxigenic Escherichia coli (ETEC) strain harboring genes encoding colonization surface antigen 13 (CS13) and a heat-labile toxin. The ESEI_597 strain was isolated from an 8-month-old child living in Korogocho, Kenya, in 2013.

Entities:  

Year:  2022        PMID： 36094211      PMCID： PMC9583797          DOI： 10.1128/mra.00416-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  11 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  PlasmidFinder and In Silico pMLST: Identification and Typing of Plasmid Replicons in Whole-Genome Sequencing (WGS).

Authors:  Alessandra Carattoli; Henrik Hasman
Journal:  Methods Mol Biol       Date:  2020

3.  A novel single-step multiplex polymerase chain reaction assay for the detection of diarrheagenic Escherichia coli.

Authors:  Miyuki Fujioka; Yoshimitsu Otomo; Chowdhury Rafiqul Ahsan
Journal:  J Microbiol Methods       Date:  2012-12-24       Impact factor: 2.363

4.  Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads.

Authors:  Gerton Lunter; Martin Goodson
Journal:  Genome Res       Date:  2010-10-27       Impact factor: 9.043

5.  Identification of acquired antimicrobial resistance genes.

Authors:  Ea Zankari; Henrik Hasman; Salvatore Cosentino; Martin Vestergaard; Simon Rasmussen; Ole Lund; Frank M Aarestrup; Mette Voldby Larsen
Journal:  J Antimicrob Chemother       Date:  2012-07-10       Impact factor: 5.790

6.  BIGSdb: Scalable analysis of bacterial genome variation at the population level.

Authors:  Keith A Jolley; Martin C J Maiden
Journal:  BMC Bioinformatics       Date:  2010-12-10       Impact factor: 3.169

7.  Sex and virulence in Escherichia coli: an evolutionary perspective.

Authors:  Thierry Wirth; Daniel Falush; Ruiting Lan; Frances Colles; Patience Mensa; Lothar H Wieler; Helge Karch; Peter R Reeves; Martin C J Maiden; Howard Ochman; Mark Achtman
Journal:  Mol Microbiol       Date:  2006-06       Impact factor: 3.501

8.  Improved workflows for high throughput library preparation using the transposome-based Nextera system.

Authors:  Sarah Lamble; Elizabeth Batty; Moustafa Attar; David Buck; Rory Bowden; Gerton Lunter; Derrick Crook; Bassam El-Fahmawi; Paolo Piazza
Journal:  BMC Biotechnol       Date:  2013-11-20       Impact factor: 2.563

9.  The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes.

Authors:  Jason W Sahl; J Gregory Caporaso; David A Rasko; Paul Keim
Journal:  PeerJ       Date:  2014-04-01       Impact factor: 2.984

10.  Kraken: ultrafast metagenomic sequence classification using exact alignments.

Authors:  Derrick E Wood; Steven L Salzberg
Journal:  Genome Biol       Date:  2014-03-03       Impact factor: 13.583
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.