| Literature DB >> 36089920 |
Lee S Schwartzberg1, Gerald Li2, Khaled Tolba2, Ariel B Bourla3, Katja Schulze4, Rujuta Gadgil5, Alexander Fine6, Katherine T Lofgren7, Ryon P Graf2, Geoffrey R Oxnard2, Davey Daniel8.
Abstract
Introduction: Whereas tumor biopsy is the reference standard for genomic profiling of advanced NSCLC, there are now multiple assays approved by the Food and Drug Administration for liquid biopsy testing of circulating tumor DNA. Here, we study the incremental value that liquid biopsy comprehensive genomic profiling (CGP) adds to tissue molecular testing.Entities:
Keywords: Biomarkers; Comprehensive genomic profiling; Liquid biopsy; NSCLC; Tissue-based testing
Year: 2022 PMID: 36089920 PMCID: PMC9460153 DOI: 10.1016/j.jtocrr.2022.100386
Source DB: PubMed Journal: JTO Clin Res Rep ISSN: 2666-3643
Figure 1Study population. (A) Analysis subcohorts are on the basis of available tissue testing results. (B) Tumor fraction distributions were similar across the three subcohorts. Whiskers span the full range of observed values, whereas the box indicates the quartiles. CGP, comprehensive genomic profiling; ND, not deteable.
Cohort Clinical and Pathologic Characteristics
| Patient Characteristic | All (N = 515) | Tissue CGP (n = 131) | Up to Five Tissue Biomarkers (n = 264) | No Tissue (n 120) | |
|---|---|---|---|---|---|
| Practice type | 0.678 | ||||
| Academic | 4 (0.78) | 0 (0.00) | 3 (1.14) | 1 (0.83) | |
| Community | 511 (99.2) | 131 (100) | 261 (98.9) | 119 (99.2) | |
| Age at enrollment | 68.0 [63.0–76.0] | 68.0 [62.0–74.0] | 68.0 [63.0–77.0] | 69.0 [63.8–78.0] | 0.339 |
| Sex | 0.795 | ||||
| F | 262 (50.9) | 67 (51.1) | 131 (49.6) | 64 (53.3) | |
| M | 253 (49.1) | 64 (48.9) | 133 (50.4) | 56 (46.7) | |
| Race | 0.107 | ||||
| Black or African American | 59 (11.5) | 7 (5.34) | 38 (14.4) | 14 (11.7) | |
| Other race | 58 (11.3) | 16 (12.2) | 32 (12.1) | 10 (8.33) | |
| Unknown | 39 (7.57) | 12 (9.16) | 15 (5.68) | 12 (10.0) | |
| White | 359 (69.7) | 96 (73.3) | 179 (67.8) | 84 (70.0) | |
| Smoking status | 0.329 | ||||
| History of smoking | 447 (86.8) | 112 (85.5) | 226 (85.6) | 109 (90.8) | |
| No history of smoking | 68 (13.2) | 19 (14.5) | 38 (14.4) | 11 (9.17) | |
| ECOG Performance Score | 0.843 | ||||
| 0 | 154 (29.9) | 38 (29.0) | 78 (29.5) | 38 (31.7) | |
| 1 | 206 (40.0) | 57 (43.5) | 106 (40.2) | 43 (35.8) | |
| 2 | 89 (17.3) | 23 (17.6) | 47 (17.8) | 19 (15.8) | |
| 3+ | 16 (3.11) | 3 (2.29) | 7 (2.65) | 6 (5.00) | |
| Not assessed | 50 (9.71) | 10 (7.63) | 26 (9.85) | 14 (11.7) | |
| AJCC stage at diagnosis: | 0.639 | ||||
| I–II | 63 (12.2) | 19 (14.5) | 34 (12.9) | 10 (8.33) | |
| III–IV | 449 (87.2) | 111 (84.7) | 229 (86.7) | 109 (90.8) | |
| Unknown | 3 (0.58) | 1 (0.76) | 1 (0.38) | 1 (0.83) | |
| Study line number: | 0.009 | ||||
| Previously treated at study line start | 147 (30.4) | 45 (37.5) | 83 (31.7) | 19 (18.8) | |
| Study line is first-line | 336 (69.6) | 75 (62.5) | 179 (68.3) | 82 (81.2) |
Note: Categorical variables are presented with counts and percentages, with chi-square tests used to compare among the subcohorts. Continuous variables are presented as medians and interquartile ranges, with Kruskal-Wallis tests to compare among the subcohorts.
AJCC, American Joint Committee on Cancer; CGP, comprehensive genomic profiling; F, female; M, male.
Figure 2Detection of NCCN biomarkers on the basis of available tissue results. (A) Liquid CGP consistently detects biomarkers across subcohorts, whereas tissue CGP detects biomarkers in the highest proportion of patients. (B) In patients with tissue CGP results, liquid CGP detects no additional patients with NCCN biomarkers, whereas liquid CGP adds meaningfully in patients getting more limited tissue testing. In patients with liquid CGP results, the reflex to tissue CGP increases the overall biomarker detection rate. CGP, comprehensive genomic profiling; NCCN, National Comprehensive Cancer Network.
Figure 3Additional NCCN biomarkers detected through testing a second specimen. (A) Patients (n = 48) whose liquid CGP detected an NCCN biomarker though limited tissue testing were negative. (B) Patients (n = 30) whose tissue CGP detected an NCCN biomarker though liquid CGP were negative, highlighting the value of reflex-to-tissue testing after a negative liquid biopsy. CGP, comprehensive genomic profiling; NCCN, National Comprehensive Cancer Network.
Figure 4For advanced NSCLC, tissue CGP and liquid CGP are complementary approaches that may be preferred in different clinical scenarios. Tissue CGP is preferred when a sufficient, high-quality tissue specimen is available as it offers the highest sensitivity to detect clinically actionable driver biomarkers. When tissue is not available, liquid CGP offers a pragmatic alternative but with lower sensitivity; if liquid CGP fails to detect actionable biomarkers, a reflex to tissue CGP is indicated, particularly if there is low circulating TF. Similarly, liquid CGP can be used as a backup if tissue CGP fails to generate a result. CGP, comprehensive genomic profiling; TF, tumor fraction.