Literature DB >> 36088394

Sphingosinicella terrae sp. nov. Isolated from a Desert Soil and Reclassification of Sphingomonas deserti as Sphingosinicella deserti comb. nov.

Dong Wang1,2, Lei Dong1, Neeli Habib3, Feng Liu2, Sohail Ahmad Jan4, Jian-Yu Jiao1, Min Xiao1, Nimaichand Salam5, Wen-Jun Li6,7.   

Abstract

A motile, rod-shaped and yellow-coloured bacterium, designated strain SYSU D60001T, was isolated from a desert soil sample. Cells were Gram-stain-negative, catalase-negative and oxidase-positive. The major cellular fatty acids were summed feature 8 (C18:1 ω7c and/or C18:1 ω6c) and C16:0. The respiratory quinone was ubiquinone-10. The genomic DNA G+C content was 68%. The polar lipids detected were diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, an unidentified phospholipid and five unidentified polar lipids. Phylogenetic analysis based on the 16S rRNA gene sequences revealed that strain SYSU D60001T represents a novel species of the genus Sphingosinicella, with closely related strains Sphingosinicella ginsenosidimutans BS1T (95.81%), Sphingomonas deserti GL-C-18T (95.75%) and Sphingosinicella humi QZX222T (95.18%). Data from polyphasic taxonomy study suggest that the isolate represents a novel species in the genus Sphingosinicella, for which the name Sphingosinicella terrae sp. nov. is proposed. The type strain of the proposed new taxon is SYSU D60001T (= DSM 104938T = KCTC 52780T = NBRC 112955T). We also propose the reclassification of Sphingomonas deserti as Sphingosinicella deserti comb. nov.
© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

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Year:  2022        PMID: 36088394     DOI: 10.1007/s00284-022-03006-0

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.343


  14 in total

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Journal:  Bioinformatics       Date:  2007-09-10       Impact factor: 6.937

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Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

4.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

5.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

6.  Amycolatopsis dongchuanensis sp. nov., an actinobacterium isolated from soil.

Authors:  Guo-Xing Nie; Hong Ming; Shuai Li; En-Min Zhou; Juan Cheng; Xia Tang; Hui-Gen Feng; Shu-Kun Tang; Wen-Jun Li
Journal:  Int J Syst Evol Microbiol       Date:  2011-12-23       Impact factor: 2.747

7.  Sphingosinicella microcystinivorans gen. nov., sp. nov., a microcystin-degrading bacterium.

Authors:  Tomoko Maruyama; Ho-Dong Park; Kazuhiko Ozawa; Yoshinori Tanaka; Tatsuo Sumino; Koei Hamana; Akira Hiraishi; Kenji Kato
Journal:  Int J Syst Evol Microbiol       Date:  2006-01       Impact factor: 2.747

8.  A large-scale evaluation of algorithms to calculate average nucleotide identity.

Authors:  Seok-Hwan Yoon; Sung-Min Ha; Jeongmin Lim; Soonjae Kwon; Jongsik Chun
Journal:  Antonie Van Leeuwenhoek       Date:  2017-02-15       Impact factor: 2.271

9.  Halobacterium vallismortis sp. nov. An amylolytic and carbohydrate-metabolizing, extremely halophilic bacterium.

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Journal:  Can J Microbiol       Date:  1978-06       Impact factor: 2.419

10.  Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia.

Authors:  Wen-Jun Li; Ping Xu; Peter Schumann; Yu-Qin Zhang; Rüdiger Pukall; Li-Hua Xu; Erko Stackebrandt; Cheng-Lin Jiang
Journal:  Int J Syst Evol Microbiol       Date:  2007-07       Impact factor: 2.747

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