| Literature DB >> 36085571 |
David Orlando Grajales Lopera1,2, Fabien Picot1,2, Roozbeh Shams1,2, Frédérick Dallaire1,2, Guillaume Sheehy1,2, Stephanie Alley1,2, Maroie Barkati2, Guila Delouya2, Jean-Francois Carrier2, Mirela Birlea2, Dominique Trudel2, Frédéric Leblond1,2,3, Cynthia Ménard2, Samuel Kadoury1,2.
Abstract
SIGNIFICANCE: The diagnosis and treatment of prostate cancer (PCa) are limited by a lack of intraoperative information to accurately target tumors with needles for biopsy and brachytherapy. An innovative image-guidance technique using optical devices could improve the diagnostic yield of biopsy and efficacy of radiotherapy. AIM: To evaluate the performance of multimodal PCa detection using biomolecular features from in-situ Raman spectroscopy (RS) combined with image-based (radiomics) features from multiparametric magnetic resonance images (mpMRI). APPROACH: In a prospective pilot clinical study, 18 patients were recruited and underwent high-dose-rate brachytherapy. Multimodality image fusion (preoperative mpMRI with intraoperative transrectal ultrasound) combined with electromagnetic tracking was used to navigate an RS needle in the prostate prior to brachytherapy. This resulting dataset consisted of Raman spectra and co-located radiomics features from mpMRI. Feature selection was performed with the constraint that no more than 10 features were retained overall from a combination of inelastic scattering spectra and radiomics. These features were used to train support vector machine classifiers for PCa detection based on leave-one-patient-out cross-validation.Entities:
Keywords: Raman spectroscopy; machine learning; magnetic resonance imaging; multimodal imaging; prostate cancer; support vector machines; tissue optics; ultrasound imaging
Mesh:
Year: 2022 PMID: 36085571 PMCID: PMC9459023 DOI: 10.1117/1.JBO.27.9.095004
Source DB: PubMed Journal: J Biomed Opt ISSN: 1083-3668 Impact factor: 3.758
Fig. 1Clinical setup: (a) ultrasound system; (b) near-infrared laser and spectrometer; (c) EM tracking system; (d) EM field generator; (e) 3D Slicer navigation system; (f) closeup of the RS probe fiber bundle next to cannula; (g) Raman excitation fiber; (h) Raman detection fibers; (i) EM sensor; and (k) schematic illustration of optical setup.,
Fig. 2Flowchart and connections diagram of the systems involved in the intervention. The larger boxes divide the pre-, intra-, and post-operative phases of the procedure. The left column in the intraoperative section contains the equipment and activities inherent to brachytherapy. The right column contains the steps and systems added to the interventions to carry out the present study.
Fig. 3Sample signal processing. (a) About 50 raw fingerprint acquisitions from one inspected site and (b) the resulting processed Raman spectrum.
Radiomics features extracted from the three mpMRI sequences, and their identifiers.
| Group | Name | Identifier | ||
|---|---|---|---|---|
| T2 | ADC | b2000 | ||
| First order | Energy | r1 | r17 | r33 |
| Total energy | r2 | r18 | r34 | |
| Entropy | r3 | r19 | r35 | |
| Mean | r4 | r20 | r36 | |
| Median | r5 | r21 | r37 | |
| Standard deviation | r6 | r22 | r38 | |
| Mean absolute deviation | r7 | r23 | r39 | |
| Uniformity | r8 | r24 | r40 | |
| GLCM | Auto correlation | r9 | r25 | r41 |
| Cluster shade | r10 | r26 | r42 | |
| Contrast | r11 | r27 | r43 | |
| Correlation | r12 | r28 | r44 | |
| Id (inverse difference) | r13 | r29 | r45 | |
| Difference entropy | r14 | r30 | r46 | |
| Joint entropy | r15 | r31 | r47 | |
| Joint energy | r16 | r32 | r48 | |
Clinical data.
| Number of patients | 18 |
| Median age (years) | 68 (range: 60–74) |
| Median inspected sites/patient | 2 (range: 2–5) |
| Total inspected sites | 47 |
| Benign | 23 |
| GS: | 3 ( |
| GS: | 10 ( |
| GS: | 8 |
| GS: | 3 |
| Total number of features | 4650 |
| FP (RS) | 1801 |
| HW (RS) | 2801 |
| Rad | 48 |
| Mean added time (min) | 18.4 ( |
Number of samples with .
Fig. 4Sample image registration and co-location results. (a) GTV originally segmented on preoperative mpMRI is (b) projected over the real-time TRUS using a surface-based elastic registration algorithm; the inverse process allows identifying the MRI coordinates corresponding to the inspected sites. (c) A 3D model of the plan can be rendered. (d) Pathological image samples of benign prostatic parenchyma and (e) acinar adenocarcinoma GS: , , and HG: 40% to 50%.
Classification performance of SVM models (LOPOCV) for discriminating and .
| Features | Number features | AUC | Prediction accuracy | Sensitivity | Specificity | SV rate |
|---|---|---|---|---|---|---|
| FP | 8.3 | 0.74 | 0.72 | 0.67 | 0.77 | 0.64 |
| HW | 8.3 | 0.55 | 0.53 | 0.48 | 0.58 | 0.76 |
| Rad | 8.4 | 0.79 | 0.74 | 0.76 | 0.73 | 0.70 |
|
| 8.2 | 0.80 | 0.70 | 0.78 | 0.64 | 0.62 |
|
| 8.3 | 0.82 | 0.83 | 0.81 | 0.85 | 0.55 |
|
| 8.2 | 0.79 | 0.81 | 0.71 | 0.88 | 0.52 |
|
| 8.6 | 0.58 | 0.62 | 0.67 | 0.58 | 0.64 |
Note: SV rate: number of support vectors/total of observations.
Fig. 5ROC curve and optimal point for discriminating and , for models including feature selection (). AUC: Area under the curve.
Fig. 6Classification performance of the model in function of the number of features selected.
Fig. 7Average and standard deviation (a) of processed FP Raman spectra and (b) histograms of selected features for RS; average and standard deviation (c) of mpMRI radiomics and (b) histograms of selected radiomics features. The radiomics features corresponding to each identifier are given in Table 1.
Classification performance using the most frequently selected features, based on different prediction tasks.
| Prediction task |
|
| High grade |
|---|---|---|---|
| Total inspected sites | 47 | 47 | 41 |
| True class (+1) |
|
| |
| False class (−1) |
|
|
|
| Accuracy | 0.91 | 0.87 | 0.88 |
| Sensitivity | 0.90 | 0.83 | 0.89 |
| Specificity | 0.92 | 0.91 | 0.87 |
Fig. 8ROC curve and optimal point for models trained with the seven most frequently selected features, for the three different prediction tasks (, , and high grade).