| Literature DB >> 36082363 |
Gregor Perich1, Helge Aasen1, Jochem Verrelst2, Francesco Argento1, Achim Walter1, Frank Liebisch1,3.
Abstract
Nitrogen (N) is one of the key nutrients supplied in agricultural production worldwide. Over-fertilization can have negative influences on the field and the regional level (e.g., agro-ecosystems). Remote sensing of the plant N of field crops presents a valuable tool for the monitoring of N flows in agro-ecosystems. Available data for validation of satellite-based remote sensing of N is scarce. Therefore, in this study, field spectrometer measurements were used to simulate data of the Sentinel-2 (S2) satellites developed for vegetation monitoring by the ESA. The prediction performance of normalized ratio indices (NRIs), random forest regression (RFR) and Gaussian processes regression (GPR) for plant-N-related traits was assessed on a diverse real-world dataset including multiple crops, field sites and years. The plant N traits included the mass-based N measure, N concentration in the biomass (Nconc), and an area-based N measure approximating the plant N uptake (NUP). Spectral indices such as normalized ratio indices (NRIs) performed well, but the RFR and GPR methods outperformed the NRIs. Key spectral bands for each trait were identified using the RFR variable importance measure and the Gaussian processes regression band analysis tool (GPR-BAT), highlighting the importance of the short-wave infrared (SWIR) region for estimation of plant Nconc-and to a lesser extent the NUP. The red edge (RE) region was also important. The GPR-BAT showed that five bands were sufficient for plant N trait and leaf area index (LAI) estimation and that a surplus of bands effectively reduced prediction performance. A global sensitivity analysis (GSA) was performed on all traits simultaneously, showing the dominance of the LAI in the mixed remote sensing signal. To delineate the plant-N-related traits from this signal, regional and/or national data collection campaigns producing large crop spectral libraries (CSL) are needed. An improved database will likely enable the mapping of N at the agro-ecosystem level or for use in precision farming by farmers in the future.Entities:
Keywords: ARTMO toolbox; agro-ecosystem monitoring; chlorophyll; gaussian processes regression; leaf area index; nitrogen; random forest; spectral indices
Year: 2021 PMID: 36082363 PMCID: PMC7613346 DOI: 10.3390/rs13122404
Source DB: PubMed Journal: Remote Sens (Basel) ISSN: 2072-4292 Impact factor: 5.349
Datasets and traits used in this study.
| Individual Traits |
| Min | Median | Max |
|---|---|---|---|---|
| Nconc [%] | 322 | 0.68 | 3.46 | 5.32 |
| ChlAB [mg g−1] | 194 | 2.28 | 5.34 | 7.11 |
| LAI [m2 m−2] | 272 | 0.05 | 2.09 | 8.63 |
| LAI*Nconc [%] | 210 | 0.17 | 7.20 | 41.25 |
| LAI*ChlAB [mg g−1] | 193 | 0.14 | 11.25 | 56.01 |
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| full dataset | 180 | 15 | 30 | 80 |
| erectophile | 98 | 15 | 31 | 80 |
| planophile | 55 | 15 | 22 | 67 |
| winter wheat | 64 | 15 | 30 | 32 |
| sugar beet | 45 | 15 | 21 | 38 |
The specifications of the Multispectral Instrument (MSI) on board the Sentinel-2 (S2) satellites (reproduced from the European Space Agency ESA). Band B10 was not used in the S2 resampled dataset as it lies within a region of atmospheric water absorption.
| Band | Band Name | Center Wavelength [nm] | Bandwidth [nm] | Ground Resolution [m] |
|---|---|---|---|---|
| B01 | Coastal aerosol | 443 | 21.00 | 60 |
| B02 | Blue | 490 | 66.00 | 10 |
| B03 | Green | 560 | 36.00 | 10 |
| B04 | Red | 665 | 31.00 | 10 |
| B05 | RE1 | 705 | 15.50 | 20 |
| B06 | RE2 | 740 | 15.00 | 20 |
| B07 | RE3 | 783 | 20.00 | 20 |
| B08 | NIR1 | 842 | 106.00 | 10 |
| B8a | NIR2 | 865 | 21.50 | 20 |
| B09 | Water vapour | 945 | 20.50 | 60 |
| B10 | SWIR—cirrus | 1375 | 30.50 | 60 |
| B11 | SWIR1 | 1610 | 92.50 | 20 |
| B12 | SWIR2 | 2190 | 180.00 | 20 |
Figure 1Coefficients of determination (R2) values for the field spectrometer (FS) dataset (empty bars) and the Sentinel-2 (S2) resampled dataset (hatched bars) for the used methods: Normalized Ratio Index (NRI, blue), Random Forest Regression (RFR, red) and Gaussian Processes Regression (GPR, green) as related to the plant traits described in Table 1.
Figure 2Calculated variable importance scores of the random forest regression (RFR) on the full dataset for the field spectrometer (FS, left) and the Sentinel-2 (S2, right) resampled data. The colors show the waveband regions visible (VIS: 400–690 nm), red edge (RE: 700–790 nm), near infrared (NIR: 800–1350 nm) and short-wave infrared (SWIR: 1450–2400 nm). The water absorption bands in the regions 1350–1450, 1790–1990 and >2400 nm were omitted due to their low signal to noise ratio.
Figure 3Prediction performance in (R2) for the traits as a function of the number of spectral bands obtained using the Gaussian processes regression–band analysis tool (GPR-BAT) tool with sequential backward band removal (SBBR) algorithm applied (for details on SBBR, see: [86]).
Figure 4Occurrence of the top five ranked bands with lowest GPR sigma values for the ASD sensor (left) and the S2 resampled sensor (right). Data from 10-fold cross validation, e.g., 50 (10 folds × 5 ranks) is the maximum possible occurrence.
Figure 5GSA results for the ASD ground spectrometer (left) and the Sentinel-2 resampled (right) sensor for the full dataset.